Analysis of interatomic Contacts of Structural Units in PDB entry:
8J4F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J4F entry

There are 2 chains in PDB entry 8J4F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8GLU 1768
B
 GLY 20ALA 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 8J4F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 34Right-handed alpha
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
60 64Right-handed 310
Helix 4
AA4
A
67 71Right-handed 310
Helix 5
AA5
A
79 84Right-handed alpha
Helix 6
AA6
A
104 108Right-handed 310
Helix 7
AA7
A
113 124Right-handed alpha
Helix 8
AA8
A
125 143Right-handed alpha
Helix 9
AA9
A
151 175Right-handed alpha
Helix 10
AB1
A
182 186Right-handed 310
Helix 11
AB2
A
188 206Right-handed alpha
Helix 12
AB3
A
210 218Right-handed alpha
Helix 13
AB4
A
219 222Right-handed 310
Helix 14
AB5
A
223 228Right-handed alpha
Helix 15
AB6
A
230 244Right-handed alpha
Helix 16
AB7
A
245 267Right-handed alpha
Helix 17
AB8
A
269 271Right-handed 310
Helix 18
AB9
A
285 291Right-handed alpha
Helix 19
AC1
A
295 300Right-handed alpha
Helix 20
AC2
A
346 360Right-handed alpha
Helix 21
AC3
A
362 375Right-handed alpha
Helix 22
AC4
A
378 390Right-handed alpha
Helix 23
AC5
A
391 418Right-handed alpha
Helix 24
AC6
A
729 741Right-handed alpha
Helix 25
AC7
A
742 762Right-handed alpha
Helix 26
AC8
A
769 798Right-handed alpha
Helix 27
AC9
A
799 804Right-handed alpha
Helix 28
AD1
A
806 825Right-handed alpha
Helix 29
AD2
A
833 848Right-handed 310
Helix 30
AD3
A
849 863Right-handed alpha
Helix 31
AD4
A
866 889Right-handed alpha
Helix 32
AD5
A
890 895Right-handed alpha
Helix 33
AD6
A
896 899Right-handed 310
Helix 34
AD7
A
912 926Right-handed alpha
Helix 35
AD8
A
928 940Right-handed alpha
Helix 36
AD9
A
940 973Right-handed alpha
Helix 37
AE1
A
986 1014Right-handed alpha
Helix 38
AE2
A
1176 1191Right-handed alpha
Helix 39
AE3
A
1191 1208Right-handed alpha
Helix 40
AE4
A
1209 1212Right-handed 310
Helix 41
AE5
A
1215 1218Right-handed 310
Helix 42
AE6
A
1219 1249Right-handed alpha
Helix 43
AE7
A
1249 1255Right-handed alpha
Helix 44
AE8
A
1256 1278Right-handed alpha
Helix 45
AE9
A
1283 1291Right-handed alpha
Helix 46
AF1
A
1292 1301Right-handed 310
Helix 47
AF2
A
1304 1344Right-handed alpha
Helix 48
AF3
A
1366 1377Right-handed alpha
Helix 49
AF4
A
1391 1405Right-handed alpha
Helix 50
AF5
A
1407 1418Right-handed alpha
Helix 51
AF6
A
1430 1432Right-handed 310
Helix 52
AF7
A
1433 1467Right-handed alpha
Helix 53
AF8
A
1475 1490Right-handed alpha
Helix 54
AF9
A
1502 1513Right-handed alpha
Helix 55
AG1
A
1514 1535Right-handed alpha
Helix 56
AG2
A
1540 1569Right-handed alpha
Helix 57
AG3
A
1570 1575Right-handed 310
Helix 58
AG4
A
1576 1603Right-handed alpha
Helix 59
AG5
A
1605 1614Right-handed alpha
Helix 60
AG6
A
1616 1621Right-handed alpha
Helix 61
AG7
A
1622 1626Right-handed 310
Helix 62
AG8
A
1627 1666Right-handed alpha
Helix 63
AG9
A
1667 1669Right-handed 310
Helix 64
AH1
A
1683 1696Right-handed alpha
Helix 65
AH2
A
1699 1708Right-handed alpha
Helix 66
AH3
A
1732 1767Right-handed alpha
Helix 67
AH4
B
83 87Right-handed 310
Helix 68
AH5
B
112 115Right-handed 310
Helix 69
AH6
B
153 192Right-handed alpha
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There are 5 sheets in PDB entry 8J4F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
89 91anti-parallel
Strand 3
A
97 99anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 277first strand
Strand 2
A
328 332anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1357 1358first strand
Strand 2
A
1349 1352anti-parallel
Strand 3
A
1380 1383anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
133 147parallel
Strand 3
B
117 128anti-parallel
Strand 4
B
50 61anti-parallel
Strand 5
B
68 74anti-parallel
Strand 6
B
77 80anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
106 108anti-parallel
Strand 3
B
91 92anti-parallel
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