Analysis of interatomic Contacts of Structural Units in PDB entry:
8J4H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J4H entry

There is 1 chain in PDB entry 8J4H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1LEU 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8J4H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 26Right-handed alpha
Helix 2
AA2
A
35 47Right-handed alpha
Helix 3
AA3
A
48 50Right-handed 310
Helix 4
AA4
A
59 69Right-handed alpha
Helix 5
AA5
A
76 81Right-handed alpha
Helix 6
AA6
A
84 88Right-handed 310
Helix 7
AA7
A
112 116Right-handed 310
Helix 8
AA8
A
119 129Right-handed 310
Helix 9
AA9
A
138 153Right-handed alpha
Helix 10
AB1
A
153 167Right-handed alpha
Helix 11
AB2
A
174 184Right-handed alpha
Helix 12
AB3
A
196 204Right-handed alpha
Helix 13
AB4
A
218 221Right-handed 310
Helix 14
AB5
A
236 248Right-handed alpha
Helix 15
AB6
A
249 259Right-handed alpha
Helix 16
AB7
A
277 285Right-handed alpha
Helix 17
AB8
A
289 294Right-handed 310
Helix 18
AB9
A
295 306Right-handed alpha
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There are 2 sheets in PDB entry 8J4H. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 33first strand
Strand 2
A
2 7parallel
Strand 3
A
54 56parallel
Strand 4
A
223 230anti-parallel
Strand 5
A
95 107anti-parallel
Strand 6
A
189 193anti-parallel
Strand 7
A
132 134parallel
Strand 8
A
170 171parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 33first strand
Strand 2
A
2 7parallel
Strand 3
A
54 56parallel
Strand 4
A
223 230anti-parallel
Strand 5
A
95 107anti-parallel
Strand 6
A
209 212anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il