Analysis of interatomic Contacts of Structural Units in PDB entry:
8J4N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J4N entry

There are 2 chains in PDB entry 8J4N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 91GLN 294
B
 PRO 93MET 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8J4N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
102 104Right-handed 310
Helix 2
AA2
A
108 119Right-handed alpha
Helix 3
AA3
A
130 140Right-handed alpha
Helix 4
AA4
A
176 181Right-handed 310
Helix 5
AA5
A
185 191Right-handed alpha
Helix 6
AA6
A
205 209Right-handed 310
Helix 7
AA7
A
219 229Right-handed alpha
Helix 8
AA8
A
238 244Right-handed alpha
Helix 9
AA9
A
245 250Right-handed alpha
Helix 10
AB1
A
278 293Right-handed alpha
Helix 11
AB2
B
102 104Right-handed 310
Helix 12
AB3
B
108 119Right-handed alpha
Helix 13
AB4
B
130 140Right-handed alpha
Helix 14
AB5
B
176 181Right-handed 310
Helix 15
AB6
B
185 191Right-handed alpha
Helix 16
AB7
B
205 209Right-handed 310
Helix 17
AB8
B
219 229Right-handed alpha
Helix 18
AB9
B
238 244Right-handed alpha
Helix 19
AC1
B
246 250Right-handed alpha
Helix 20
AC2
B
256 260Right-handed 310
Helix 21
AC3
B
278 292Right-handed alpha
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There are 4 sheets in PDB entry 8J4N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 129first strand
Strand 2
A
94 100parallel
Strand 3
A
145 149parallel
Strand 4
A
264 272anti-parallel
Strand 5
A
158 173anti-parallel
Strand 6
A
233 237anti-parallel
Strand 7
A
194 197parallel
Strand 8
A
214 217parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 129first strand
Strand 2
A
94 100parallel
Strand 3
A
145 149parallel
Strand 4
A
264 272anti-parallel
Strand 5
A
158 173anti-parallel
Strand 6
A
251 253anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 129first strand
Strand 2
B
94 100parallel
Strand 3
B
145 148parallel
Strand 4
B
264 272anti-parallel
Strand 5
B
158 173anti-parallel
Strand 6
B
233 237anti-parallel
Strand 7
B
194 197parallel
Strand 8
B
214 217parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 129first strand
Strand 2
B
94 100parallel
Strand 3
B
145 148parallel
Strand 4
B
264 272anti-parallel
Strand 5
B
158 173anti-parallel
Strand 6
B
251 253anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il