Analysis of interatomic Contacts of Structural Units in PDB entry:
8J4O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J4O entry

There are 2 chains in PDB entry 8J4O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 94LYS 291
B
 LEU 91ARG 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8J4O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
102 104Right-handed 310
Helix 2
AA2
A
108 119Right-handed alpha
Helix 3
AA3
A
130 140Right-handed alpha
Helix 4
AA4
A
176 181Right-handed 310
Helix 5
AA5
A
185 191Right-handed alpha
Helix 6
AA6
A
219 229Right-handed alpha
Helix 7
AA7
A
238 244Right-handed alpha
Helix 8
AA8
A
246 250Right-handed alpha
Helix 9
AA9
A
278 291Right-handed alpha
Helix 10
AB1
B
102 104Right-handed 310
Helix 11
AB2
B
108 119Right-handed alpha
Helix 12
AB3
B
130 140Right-handed alpha
Helix 13
AB4
B
176 180Right-handed 310
Helix 14
AB5
B
185 191Right-handed alpha
Helix 15
AB6
B
205 209Right-handed 310
Helix 16
AB7
B
219 229Right-handed alpha
Helix 17
AB8
B
238 244Right-handed alpha
Helix 18
AB9
B
245 250Right-handed alpha
Helix 19
AC1
B
278 292Right-handed alpha
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There are 2 sheets in PDB entry 8J4O. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
158 173anti-parallel
Strand 3
A
233 237anti-parallel
Strand 4
A
194 197parallel
Strand 5
A
214 217parallel
Strand 6
B
123 129parallel
Strand 7
B
94 100parallel
Strand 8
B
145 149parallel
Strand 9
B
263 272anti-parallel
Strand 10
B
158 173anti-parallel
Strand 11
B
251 253anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
158 173anti-parallel
Strand 3
A
264 272anti-parallel
Strand 4
A
145 149anti-parallel
Strand 5
A
95 100parallel
Strand 6
A
124 129parallel
Strand 7
B
214 217parallel
Strand 8
B
194 197parallel
Strand 9
B
233 237parallel
Strand 10
B
158 173anti-parallel
Strand 11
B
251 253anti-parallel
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