Analysis of interatomic Contacts of Structural Units in PDB entry:
8J4R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J4R entry

There are 8 chains in PDB entry 8J4R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 16	VAL 608
A	GLY 610	GLY 750
B	ASN 16	VAL 608
B	GLY 610	GLY 750
C	ASN 15	VAL 608
C	GLY 610	GLY 750
D	ASN 15	VAL 608
D	GLY 610	GLY 750

There are133 helices in PDB entry 8J4R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	22	Right-handed alpha
Helix 2	AA2	A	52	57	Right-handed alpha
Helix 3	AA3	A	62	70	Right-handed alpha
Helix 4	AA4	A	107	119	Right-handed alpha
Helix 5	AA5	A	150	154	Right-handed 310
Helix 6	AA6	A	210	212	Right-handed 310
Helix 7	AA7	A	213	222	Right-handed alpha
Helix 8	AA8	A	236	246	Right-handed alpha
Helix 9	AA9	A	249	258	Right-handed alpha
Helix 10	AB1	A	259	262	Right-handed 310
Helix 11	AB2	A	265	269	Right-handed 310
Helix 12	AB3	A	303	314	Right-handed alpha
Helix 13	AB4	A	316	328	Right-handed alpha
Helix 14	AB5	A	344	348	Right-handed 310
Helix 15	AB6	A	381	386	Right-handed alpha
Helix 16	AB7	A	405	424	Right-handed alpha
Helix 17	AB8	A	427	435	Right-handed 310
Helix 18	AB9	A	473	477	Right-handed 310
Helix 19	AC1	A	495	499	Right-handed 310
Helix 20	AC2	A	502	511	Right-handed alpha
Helix 21	AC3	A	513	530	Right-handed alpha
Helix 22	AC4	A	533	545	Right-handed alpha
Helix 23	AC5	A	548	559	Right-handed alpha
Helix 24	AC6	A	564	569	Right-handed alpha
Helix 25	AC7	A	582	586	Right-handed 310
Helix 26	AC8	A	609	623	Right-handed alpha
Helix 27	AC9	A	655	659	Right-handed 310
Helix 28	AD1	A	667	676	Right-handed alpha
Helix 29	AD2	A	677	690	Right-handed alpha
Helix 30	AD3	A	699	707	Right-handed alpha
Helix 31	AD4	A	721	733	Right-handed alpha
Helix 32	AD5	A	734	736	Right-handed 310
Helix 33	AD6	A	738	740	Right-handed 310
Helix 34	AD7	A	741	748	Right-handed alpha
Helix 35	AD8	B	17	21	Right-handed alpha
Helix 36	AD9	B	52	57	Right-handed alpha
Helix 37	AE1	B	62	69	Right-handed alpha
Helix 38	AE2	B	70	72	Right-handed 310
Helix 39	AE3	B	107	119	Right-handed alpha
Helix 40	AE4	B	150	154	Right-handed 310
Helix 41	AE5	B	210	212	Right-handed 310
Helix 42	AE6	B	213	222	Right-handed alpha
Helix 43	AE7	B	236	246	Right-handed alpha
Helix 44	AE8	B	249	258	Right-handed alpha
Helix 45	AE9	B	259	262	Right-handed 310
Helix 46	AF1	B	265	269	Right-handed 310
Helix 47	AF2	B	303	314	Right-handed alpha
Helix 48	AF3	B	316	329	Right-handed alpha
Helix 49	AF4	B	344	348	Right-handed 310
Helix 50	AF5	B	381	386	Right-handed alpha
Helix 51	AF6	B	405	423	Right-handed alpha
Helix 52	AF7	B	427	435	Right-handed 310
Helix 53	AF8	B	473	477	Right-handed 310
Helix 54	AF9	B	495	499	Right-handed 310
Helix 55	AG1	B	502	511	Right-handed alpha
Helix 56	AG2	B	513	530	Right-handed alpha
Helix 57	AG3	B	533	546	Right-handed alpha
Helix 58	AG4	B	548	559	Right-handed alpha
Helix 59	AG5	B	564	569	Right-handed alpha
Helix 60	AG6	B	582	586	Right-handed 310
Helix 61	AG7	B	609	623	Right-handed alpha
Helix 62	AG8	B	655	659	Right-handed 310
Helix 63	AG9	B	667	676	Right-handed alpha
Helix 64	AH1	B	677	690	Right-handed alpha
Helix 65	AH2	B	699	706	Right-handed alpha
Helix 66	AH3	B	721	734	Right-handed alpha
Helix 67	AH4	B	738	740	Right-handed 310
Helix 68	AH5	B	741	746	Right-handed alpha
Helix 69	AH6	C	16	21	Right-handed alpha
Helix 70	AH7	C	52	57	Right-handed alpha
Helix 71	AH8	C	62	69	Right-handed alpha
Helix 72	AH9	C	70	72	Right-handed 310
Helix 73	AI1	C	107	119	Right-handed alpha
Helix 74	AI2	C	150	154	Right-handed 310
Helix 75	AI3	C	210	212	Right-handed 310
Helix 76	AI4	C	213	222	Right-handed alpha
Helix 77	AI5	C	236	246	Right-handed alpha
Helix 78	AI6	C	249	258	Right-handed alpha
Helix 79	AI7	C	259	262	Right-handed 310
Helix 80	AI8	C	303	314	Right-handed alpha
Helix 81	AI9	C	316	328	Right-handed alpha
Helix 82	AJ1	C	344	346	Right-handed 310
Helix 83	AJ2	C	381	386	Right-handed alpha
Helix 84	AJ3	C	405	423	Right-handed alpha
Helix 85	AJ4	C	427	435	Right-handed 310
Helix 86	AJ5	C	473	477	Right-handed 310
Helix 87	AJ6	C	495	499	Right-handed 310
Helix 88	AJ7	C	502	511	Right-handed alpha
Helix 89	AJ8	C	513	530	Right-handed alpha
Helix 90	AJ9	C	533	545	Right-handed alpha
Helix 91	AK1	C	548	559	Right-handed alpha
Helix 92	AK2	C	566	570	Right-handed 310
Helix 93	AK3	C	582	586	Right-handed 310
Helix 94	AK4	C	609	623	Right-handed alpha
Helix 95	AK5	C	655	659	Right-handed 310
Helix 96	AK6	C	667	676	Right-handed alpha
Helix 97	AK7	C	677	690	Right-handed alpha
Helix 98	AK8	C	699	706	Right-handed alpha
Helix 99	AK9	C	721	734	Right-handed alpha
Helix 100	AL1	C	738	740	Right-handed 310
Helix 101	AL2	C	741	747	Right-handed alpha
Helix 102	AL3	D	16	22	Right-handed alpha
Helix 103	AL4	D	52	57	Right-handed alpha
Helix 104	AL5	D	62	70	Right-handed alpha
Helix 105	AL6	D	107	119	Right-handed alpha
Helix 106	AL7	D	150	154	Right-handed 310
Helix 107	AL8	D	210	212	Right-handed 310
Helix 108	AL9	D	213	222	Right-handed alpha
Helix 109	AM1	D	236	246	Right-handed alpha
Helix 110	AM2	D	249	258	Right-handed alpha
Helix 111	AM3	D	259	262	Right-handed 310
Helix 112	AM4	D	303	314	Right-handed alpha
Helix 113	AM5	D	316	329	Right-handed alpha
Helix 114	AM6	D	344	346	Right-handed 310
Helix 115	AM7	D	381	386	Right-handed alpha
Helix 116	AM8	D	405	423	Right-handed alpha
Helix 117	AM9	D	427	435	Right-handed 310
Helix 118	AN1	D	473	477	Right-handed 310
Helix 119	AN2	D	495	499	Right-handed 310
Helix 120	AN3	D	502	512	Right-handed alpha
Helix 121	AN4	D	513	529	Right-handed alpha
Helix 122	AN5	D	533	545	Right-handed alpha
Helix 123	AN6	D	548	559	Right-handed alpha
Helix 124	AN7	D	564	569	Right-handed alpha
Helix 125	AN8	D	582	586	Right-handed 310
Helix 126	AN9	D	609	623	Right-handed alpha
Helix 127	AO1	D	655	659	Right-handed 310
Helix 128	AO2	D	667	676	Right-handed alpha
Helix 129	AO3	D	677	690	Right-handed alpha
Helix 130	AO4	D	700	707	Right-handed alpha
Helix 131	AO5	D	721	734	Right-handed alpha
Helix 132	AO6	D	738	740	Right-handed 310
Helix 133	AO7	D	741	748	Right-handed alpha

There are 15 sheets in PDB entry 8J4R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	C	453	454	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	D	485	492	anti-parallel
Strand 3	C	485	491	anti-parallel
Strand 4	B	96	97	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	402	first strand
Strand 2	A	277	280	anti-parallel
Strand 3	A	286	295	anti-parallel
Strand 4	A	333	342	anti-parallel
Strand 5	A	368	377	anti-parallel
Strand 6	A	131	140	anti-parallel
Strand 7	A	160	167	anti-parallel
Strand 8	A	184	191	anti-parallel
Strand 9	A	194	201	anti-parallel
Strand 10	A	271	272	anti-parallel
Strand 11	A	286	295	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	B	485	492	anti-parallel
Strand 3	A	485	492	anti-parallel
Strand 4	D	95	97	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	650	first strand
Strand 2	A	626	631	parallel
Strand 3	A	599	603	parallel
Strand 4	A	661	664	parallel
Strand 5	A	693	697	parallel
Strand 6	A	716	719	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	636	638	first strand
Strand 2	A	644	646	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	401	first strand
Strand 2	B	277	280	anti-parallel
Strand 3	B	286	295	anti-parallel
Strand 4	B	333	342	anti-parallel
Strand 5	B	368	377	anti-parallel
Strand 6	B	131	140	anti-parallel
Strand 7	B	160	167	anti-parallel
Strand 8	B	184	191	anti-parallel
Strand 9	B	194	201	anti-parallel
Strand 10	B	271	272	anti-parallel
Strand 11	B	286	295	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	649	650	first strand
Strand 2	B	626	631	parallel
Strand 3	B	599	603	parallel
Strand 4	B	661	664	parallel
Strand 5	B	693	697	parallel
Strand 6	B	716	719	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	638	first strand
Strand 2	B	644	647	anti-parallel

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There are 11 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	402	first strand
Strand 2	C	277	280	anti-parallel
Strand 3	C	286	295	anti-parallel
Strand 4	C	333	342	anti-parallel
Strand 5	C	368	377	anti-parallel
Strand 6	C	131	140	anti-parallel
Strand 7	C	160	167	anti-parallel
Strand 8	C	184	191	anti-parallel
Strand 9	C	194	201	anti-parallel
Strand 10	C	271	272	anti-parallel
Strand 11	C	286	295	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	649	650	first strand
Strand 2	C	626	631	parallel
Strand 3	C	599	603	parallel
Strand 4	C	661	664	parallel
Strand 5	C	693	697	parallel
Strand 6	C	716	719	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	636	638	first strand
Strand 2	C	644	646	anti-parallel

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There are 11 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	401	first strand
Strand 2	D	277	280	anti-parallel
Strand 3	D	286	295	anti-parallel
Strand 4	D	333	342	anti-parallel
Strand 5	D	368	377	anti-parallel
Strand 6	D	131	140	anti-parallel
Strand 7	D	160	167	anti-parallel
Strand 8	D	184	191	anti-parallel
Strand 9	D	194	201	anti-parallel
Strand 10	D	271	272	anti-parallel
Strand 11	D	286	295	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	649	650	first strand
Strand 2	D	626	631	parallel
Strand 3	D	599	603	parallel
Strand 4	D	661	664	parallel
Strand 5	D	694	697	parallel
Strand 6	D	716	719	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	636	638	first strand
Strand 2	D	644	646	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J4R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J4R