Analysis of interatomic Contacts of Structural Units in PDB entry:
8J4T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J4T entry

There are 8 chains in PDB entry 8J4T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	SER 575
G	MET 1	THR 223
C	GLY -1	SER 575
F	MET 1	THR 223
D	GLY -1	SER 575
B	GLY -1	SER 575
E	MET 1	THR 223
H	MET 1	THR 223

There are128 helices in PDB entry 8J4T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	47	Right-handed alpha
Helix 2	AA2	A	47	52	Right-handed alpha
Helix 3	AA3	A	60	64	Right-handed 310
Helix 4	AA4	A	83	93	Right-handed alpha
Helix 5	AA5	A	143	147	Right-handed 310
Helix 6	AA6	A	264	278	Right-handed alpha
Helix 7	AA7	A	295	308	Right-handed alpha
Helix 8	AA8	A	321	326	Right-handed 310
Helix 9	AA9	A	358	371	Right-handed alpha
Helix 10	AB1	A	380	395	Right-handed alpha
Helix 11	AB2	A	396	399	Right-handed 310
Helix 12	AB3	A	413	423	Right-handed alpha
Helix 13	AB4	A	447	457	Right-handed alpha
Helix 14	AB5	A	475	493	Right-handed alpha
Helix 15	AB6	A	493	503	Right-handed alpha
Helix 16	AB7	A	511	520	Right-handed alpha
Helix 17	AB8	A	521	529	Right-handed alpha
Helix 18	AB9	A	532	540	Right-handed alpha
Helix 19	AC1	A	540	551	Right-handed alpha
Helix 20	AC2	A	553	563	Right-handed alpha
Helix 21	AC3	A	566	574	Right-handed alpha
Helix 22	AC4	G	2	9	Right-handed alpha
Helix 23	AC5	G	22	38	Right-handed alpha
Helix 24	AC6	G	50	61	Right-handed alpha
Helix 25	AC7	G	72	81	Right-handed alpha
Helix 26	AC8	G	81	91	Right-handed alpha
Helix 27	AC9	G	109	121	Right-handed alpha
Helix 28	AD1	G	132	144	Right-handed alpha
Helix 29	AD2	G	145	155	Right-handed alpha
Helix 30	AD3	G	163	167	Right-handed 310
Helix 31	AD4	G	168	181	Right-handed alpha
Helix 32	AD5	G	204	213	Right-handed alpha
Helix 33	AD6	C	31	47	Right-handed alpha
Helix 34	AD7	C	47	52	Right-handed alpha
Helix 35	AD8	C	60	64	Right-handed 310
Helix 36	AD9	C	83	93	Right-handed alpha
Helix 37	AE1	C	143	147	Right-handed 310
Helix 38	AE2	C	264	278	Right-handed alpha
Helix 39	AE3	C	295	308	Right-handed alpha
Helix 40	AE4	C	321	326	Right-handed 310
Helix 41	AE5	C	358	371	Right-handed alpha
Helix 42	AE6	C	380	395	Right-handed alpha
Helix 43	AE7	C	396	399	Right-handed 310
Helix 44	AE8	C	413	423	Right-handed alpha
Helix 45	AE9	C	447	457	Right-handed alpha
Helix 46	AF1	C	475	493	Right-handed alpha
Helix 47	AF2	C	493	503	Right-handed alpha
Helix 48	AF3	C	511	520	Right-handed alpha
Helix 49	AF4	C	521	529	Right-handed alpha
Helix 50	AF5	C	532	540	Right-handed alpha
Helix 51	AF6	C	540	551	Right-handed alpha
Helix 52	AF7	C	553	563	Right-handed alpha
Helix 53	AF8	C	566	574	Right-handed alpha
Helix 54	AF9	F	2	9	Right-handed alpha
Helix 55	AG1	F	22	38	Right-handed alpha
Helix 56	AG2	F	50	61	Right-handed alpha
Helix 57	AG3	F	72	81	Right-handed alpha
Helix 58	AG4	F	81	91	Right-handed alpha
Helix 59	AG5	F	109	121	Right-handed alpha
Helix 60	AG6	F	132	144	Right-handed alpha
Helix 61	AG7	F	145	155	Right-handed alpha
Helix 62	AG8	F	163	167	Right-handed 310
Helix 63	AG9	F	168	181	Right-handed alpha
Helix 64	AH1	F	204	213	Right-handed alpha
Helix 65	AH2	D	31	47	Right-handed alpha
Helix 66	AH3	D	47	52	Right-handed alpha
Helix 67	AH4	D	60	64	Right-handed 310
Helix 68	AH5	D	83	93	Right-handed alpha
Helix 69	AH6	D	143	147	Right-handed 310
Helix 70	AH7	D	264	278	Right-handed alpha
Helix 71	AH8	D	295	308	Right-handed alpha
Helix 72	AH9	D	321	326	Right-handed 310
Helix 73	AI1	D	358	371	Right-handed alpha
Helix 74	AI2	D	380	395	Right-handed alpha
Helix 75	AI3	D	396	399	Right-handed 310
Helix 76	AI4	D	413	423	Right-handed alpha
Helix 77	AI5	D	447	457	Right-handed alpha
Helix 78	AI6	D	475	493	Right-handed alpha
Helix 79	AI7	D	493	503	Right-handed alpha
Helix 80	AI8	D	511	520	Right-handed alpha
Helix 81	AI9	D	521	529	Right-handed alpha
Helix 82	AJ1	D	532	540	Right-handed alpha
Helix 83	AJ2	D	540	551	Right-handed alpha
Helix 84	AJ3	D	553	563	Right-handed alpha
Helix 85	AJ4	D	566	574	Right-handed alpha
Helix 86	AJ5	B	31	47	Right-handed alpha
Helix 87	AJ6	B	47	52	Right-handed alpha
Helix 88	AJ7	B	60	64	Right-handed 310
Helix 89	AJ8	B	83	93	Right-handed alpha
Helix 90	AJ9	B	143	147	Right-handed 310
Helix 91	AK1	B	264	278	Right-handed alpha
Helix 92	AK2	B	295	308	Right-handed alpha
Helix 93	AK3	B	321	326	Right-handed 310
Helix 94	AK4	B	358	371	Right-handed alpha
Helix 95	AK5	B	380	395	Right-handed alpha
Helix 96	AK6	B	396	399	Right-handed 310
Helix 97	AK7	B	413	423	Right-handed alpha
Helix 98	AK8	B	447	457	Right-handed alpha
Helix 99	AK9	B	475	493	Right-handed alpha
Helix 100	AL1	B	493	503	Right-handed alpha
Helix 101	AL2	B	511	520	Right-handed alpha
Helix 102	AL3	B	521	529	Right-handed alpha
Helix 103	AL4	B	532	540	Right-handed alpha
Helix 104	AL5	B	540	551	Right-handed alpha
Helix 105	AL6	B	553	563	Right-handed alpha
Helix 106	AL7	B	566	574	Right-handed alpha
Helix 107	AL8	E	2	9	Right-handed alpha
Helix 108	AL9	E	22	38	Right-handed alpha
Helix 109	AM1	E	50	61	Right-handed alpha
Helix 110	AM2	E	72	81	Right-handed alpha
Helix 111	AM3	E	81	91	Right-handed alpha
Helix 112	AM4	E	109	121	Right-handed alpha
Helix 113	AM5	E	132	144	Right-handed alpha
Helix 114	AM6	E	145	155	Right-handed alpha
Helix 115	AM7	E	163	167	Right-handed 310
Helix 116	AM8	E	168	181	Right-handed alpha
Helix 117	AM9	E	204	213	Right-handed alpha
Helix 118	AN1	H	2	9	Right-handed alpha
Helix 119	AN2	H	22	38	Right-handed alpha
Helix 120	AN3	H	50	61	Right-handed alpha
Helix 121	AN4	H	72	81	Right-handed alpha
Helix 122	AN5	H	81	91	Right-handed alpha
Helix 123	AN6	H	109	121	Right-handed alpha
Helix 124	AN7	H	132	144	Right-handed alpha
Helix 125	AN8	H	145	155	Right-handed alpha
Helix 126	AN9	H	163	167	Right-handed 310
Helix 127	AO1	H	168	181	Right-handed alpha
Helix 128	AO2	H	204	213	Right-handed alpha

There are 20 sheets in PDB entry 8J4T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	20	first strand
Strand 2	A	2	9	anti-parallel
Strand 3	A	72	76	anti-parallel
Strand 4	A	104	111	anti-parallel
Strand 5	A	69	70	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	20	first strand
Strand 2	A	2	9	anti-parallel
Strand 3	A	72	76	anti-parallel
Strand 4	A	104	111	anti-parallel
Strand 5	A	123	127	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	154	first strand
Strand 2	A	282	288	parallel
Strand 3	A	316	318	parallel
Strand 4	A	25	29	parallel
Strand 5	A	331	336	parallel
Strand 6	A	344	349	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	407	first strand
Strand 2	A	374	378	parallel
Strand 3	A	426	431	parallel
Strand 4	A	505	507	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	71	first strand
Strand 2	G	43	47	parallel
Strand 3	G	156	161	parallel
Strand 4	G	185	189	parallel
Strand 5	G	13	16	parallel
Strand 6	G	218	221	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	20	first strand
Strand 2	C	2	9	anti-parallel
Strand 3	C	72	76	anti-parallel
Strand 4	C	104	111	anti-parallel
Strand 5	C	69	70	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	20	first strand
Strand 2	C	2	9	anti-parallel
Strand 3	C	72	76	anti-parallel
Strand 4	C	104	111	anti-parallel
Strand 5	C	123	127	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	154	first strand
Strand 2	C	282	288	parallel
Strand 3	C	316	318	parallel
Strand 4	C	25	29	parallel
Strand 5	C	331	336	parallel
Strand 6	C	344	349	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	407	first strand
Strand 2	C	374	378	parallel
Strand 3	C	426	431	parallel
Strand 4	C	505	507	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	71	first strand
Strand 2	F	43	47	parallel
Strand 3	F	156	161	parallel
Strand 4	F	185	189	parallel
Strand 5	F	13	16	parallel
Strand 6	F	218	221	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	20	first strand
Strand 2	D	2	9	anti-parallel
Strand 3	D	72	76	anti-parallel
Strand 4	D	104	111	anti-parallel
Strand 5	D	69	70	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	20	first strand
Strand 2	D	2	9	anti-parallel
Strand 3	D	72	76	anti-parallel
Strand 4	D	104	111	anti-parallel
Strand 5	D	123	127	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	154	first strand
Strand 2	D	282	288	parallel
Strand 3	D	316	318	parallel
Strand 4	D	25	29	parallel
Strand 5	D	331	336	parallel
Strand 6	D	344	349	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	407	first strand
Strand 2	D	374	378	parallel
Strand 3	D	426	431	parallel
Strand 4	D	505	507	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	20	first strand
Strand 2	B	2	9	anti-parallel
Strand 3	B	72	76	anti-parallel
Strand 4	B	104	111	anti-parallel
Strand 5	B	69	70	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	20	first strand
Strand 2	B	2	9	anti-parallel
Strand 3	B	72	76	anti-parallel
Strand 4	B	104	111	anti-parallel
Strand 5	B	123	127	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	154	first strand
Strand 2	B	282	288	parallel
Strand 3	B	316	318	parallel
Strand 4	B	25	29	parallel
Strand 5	B	331	336	parallel
Strand 6	B	344	349	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	407	first strand
Strand 2	B	374	378	parallel
Strand 3	B	426	431	parallel
Strand 4	B	505	507	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	71	first strand
Strand 2	E	43	47	parallel
Strand 3	E	156	161	parallel
Strand 4	E	185	189	parallel
Strand 5	E	13	16	parallel
Strand 6	E	218	221	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	69	71	first strand
Strand 2	H	43	47	parallel
Strand 3	H	156	161	parallel
Strand 4	H	185	189	parallel
Strand 5	H	13	16	parallel
Strand 6	H	218	221	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J4T

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J4T