Analysis of interatomic Contacts of Structural Units in PDB entry:
8J51

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J51 entry

There are 2 chains in PDB entry 8J51 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 33	THR 546
B	GLN 33	GLN 162

There are 38 helices in PDB entry 8J51. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	57	Right-handed 310
Helix 2	AA2	A	120	133	Right-handed alpha
Helix 3	AA3	A	142	147	Right-handed alpha
Helix 4	AA4	A	152	157	Right-handed alpha
Helix 5	AA5	A	161	175	Right-handed alpha
Helix 6	AA6	A	204	215	Right-handed alpha
Helix 7	AA7	A	231	241	Right-handed alpha
Helix 8	AA8	A	254	258	Right-handed 310
Helix 9	AA9	A	278	297	Right-handed alpha
Helix 10	AB1	A	307	312	Right-handed 310
Helix 11	AB2	A	322	334	Right-handed alpha
Helix 12	AB3	A	335	337	Right-handed 310
Helix 13	AB4	A	363	368	Right-handed alpha
Helix 14	AB5	A	369	380	Right-handed alpha
Helix 15	AB6	A	394	398	Right-handed 310
Helix 16	AB7	A	405	418	Right-handed alpha
Helix 17	AB8	A	427	432	Right-handed alpha
Helix 18	AB9	A	433	465	Right-handed alpha
Helix 19	AC1	A	471	476	Right-handed alpha
Helix 20	AC2	B	52	57	Right-handed 310
Helix 21	AC3	B	120	133	Right-handed alpha
Helix 22	AC4	B	142	147	Right-handed alpha
Helix 23	AC5	B	152	157	Right-handed alpha
Helix 24	AC6	B	161	175	Right-handed alpha
Helix 25	AC7	B	204	215	Right-handed alpha
Helix 26	AC8	B	231	241	Right-handed alpha
Helix 27	AC9	B	254	258	Right-handed 310
Helix 28	AD1	B	278	297	Right-handed alpha
Helix 29	AD2	B	307	312	Right-handed 310
Helix 30	AD3	B	322	334	Right-handed alpha
Helix 31	AD4	B	335	337	Right-handed 310
Helix 32	AD5	B	363	368	Right-handed alpha
Helix 33	AD6	B	369	380	Right-handed alpha
Helix 34	AD7	B	394	398	Right-handed 310
Helix 35	AD8	B	405	418	Right-handed alpha
Helix 36	AD9	B	427	432	Right-handed alpha
Helix 37	AE1	B	433	465	Right-handed alpha
Helix 38	AE2	B	472	476	Right-handed alpha

There are 18 sheets in PDB entry 8J51. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	102	107	anti-parallel
Strand 3	A	94	99	anti-parallel
Strand 4	A	64	66	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	50	first strand
Strand 2	A	75	82	anti-parallel
Strand 3	A	86	90	anti-parallel
Strand 4	A	111	115	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	50	first strand
Strand 2	A	75	82	anti-parallel
Strand 3	A	345	346	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	342	first strand
Strand 2	A	300	303	parallel
Strand 3	A	218	223	parallel
Strand 4	A	181	184	parallel
Strand 5	A	149	151	parallel
Strand 6	A	423	424	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	269	273	anti-parallel
Strand 3	A	264	266	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	315	316	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	356	first strand
Strand 2	A	385	386	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	488	490	anti-parallel
Strand 3	A	494	496	anti-parallel
Strand 4	A	541	546	anti-parallel
Strand 5	A	514	517	anti-parallel
Strand 6	A	523	525	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	510	first strand
Strand 2	A	528	533	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	102	107	anti-parallel
Strand 3	B	94	99	anti-parallel
Strand 4	B	64	66	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	50	first strand
Strand 2	B	75	82	anti-parallel
Strand 3	B	86	90	anti-parallel
Strand 4	B	111	115	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	50	first strand
Strand 2	B	75	82	anti-parallel
Strand 3	B	345	346	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	342	first strand
Strand 2	B	300	303	parallel
Strand 3	B	218	223	parallel
Strand 4	B	181	184	parallel
Strand 5	B	149	151	parallel
Strand 6	B	423	424	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	269	273	anti-parallel
Strand 3	B	264	266	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	315	316	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	356	first strand
Strand 2	B	385	386	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	471	first strand
Strand 2	B	488	490	anti-parallel
Strand 3	B	494	496	anti-parallel
Strand 4	B	541	544	anti-parallel
Strand 5	B	514	517	anti-parallel
Strand 6	B	523	525	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	509	first strand
Strand 2	B	529	533	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J51

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J51