Analysis of interatomic Contacts of Structural Units in PDB entry:
8J53

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J53 entry

There are 5 chains in PDB entry 8J53 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 26	LYS 532
B	ASN 25	LYS 532
C	ASN 25	LYS 532
D	SER 23	LYS 532
E	SER 19	LYS 532

There are 82 helices in PDB entry 8J53. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	50	Right-handed 310
Helix 2	AA2	A	114	127	Right-handed alpha
Helix 3	AA3	A	136	141	Right-handed alpha
Helix 4	AA4	A	146	151	Right-handed alpha
Helix 5	AA5	A	155	169	Right-handed alpha
Helix 6	AA6	A	198	209	Right-handed alpha
Helix 7	AA7	A	225	234	Right-handed alpha
Helix 8	AA8	A	263	282	Right-handed alpha
Helix 9	AA9	A	309	320	Right-handed alpha
Helix 10	AB1	A	321	324	Right-handed 310
Helix 11	AB2	A	350	355	Right-handed alpha
Helix 12	AB3	A	356	367	Right-handed alpha
Helix 13	AB4	A	381	385	Right-handed 310
Helix 14	AB5	A	392	405	Right-handed alpha
Helix 15	AB6	A	414	419	Right-handed alpha
Helix 16	AB7	A	420	451	Right-handed alpha
Helix 17	AB8	A	458	463	Right-handed alpha
Helix 18	AB9	B	45	50	Right-handed 310
Helix 19	AC1	B	114	127	Right-handed alpha
Helix 20	AC2	B	136	141	Right-handed alpha
Helix 21	AC3	B	155	169	Right-handed alpha
Helix 22	AC4	B	198	209	Right-handed alpha
Helix 23	AC5	B	225	234	Right-handed alpha
Helix 24	AC6	B	263	282	Right-handed alpha
Helix 25	AC7	B	309	320	Right-handed alpha
Helix 26	AC8	B	321	324	Right-handed 310
Helix 27	AC9	B	350	355	Right-handed alpha
Helix 28	AD1	B	356	367	Right-handed alpha
Helix 29	AD2	B	381	385	Right-handed 310
Helix 30	AD3	B	392	405	Right-handed alpha
Helix 31	AD4	B	414	419	Right-handed alpha
Helix 32	AD5	B	420	451	Right-handed alpha
Helix 33	AD6	B	458	463	Right-handed alpha
Helix 34	AD7	C	45	50	Right-handed 310
Helix 35	AD8	C	114	127	Right-handed alpha
Helix 36	AD9	C	136	141	Right-handed alpha
Helix 37	AE1	C	146	151	Right-handed alpha
Helix 38	AE2	C	155	169	Right-handed alpha
Helix 39	AE3	C	198	209	Right-handed alpha
Helix 40	AE4	C	225	234	Right-handed alpha
Helix 41	AE5	C	242	244	Right-handed 310
Helix 42	AE6	C	263	282	Right-handed alpha
Helix 43	AE7	C	309	320	Right-handed alpha
Helix 44	AE8	C	321	324	Right-handed 310
Helix 45	AE9	C	350	356	Right-handed alpha
Helix 46	AF1	C	356	367	Right-handed alpha
Helix 47	AF2	C	392	405	Right-handed alpha
Helix 48	AF3	C	414	419	Right-handed alpha
Helix 49	AF4	C	420	451	Right-handed alpha
Helix 50	AF5	C	458	463	Right-handed alpha
Helix 51	AF6	D	45	50	Right-handed 310
Helix 52	AF7	D	114	127	Right-handed alpha
Helix 53	AF8	D	136	141	Right-handed alpha
Helix 54	AF9	D	155	169	Right-handed alpha
Helix 55	AG1	D	198	209	Right-handed alpha
Helix 56	AG2	D	225	234	Right-handed alpha
Helix 57	AG3	D	263	282	Right-handed alpha
Helix 58	AG4	D	309	320	Right-handed alpha
Helix 59	AG5	D	321	324	Right-handed 310
Helix 60	AG6	D	350	356	Right-handed alpha
Helix 61	AG7	D	356	367	Right-handed alpha
Helix 62	AG8	D	381	385	Right-handed 310
Helix 63	AG9	D	392	405	Right-handed alpha
Helix 64	AH1	D	414	419	Right-handed alpha
Helix 65	AH2	D	420	451	Right-handed alpha
Helix 66	AH3	D	458	463	Right-handed alpha
Helix 67	AH4	E	45	50	Right-handed 310
Helix 68	AH5	E	114	127	Right-handed alpha
Helix 69	AH6	E	136	141	Right-handed alpha
Helix 70	AH7	E	155	169	Right-handed alpha
Helix 71	AH8	E	198	209	Right-handed alpha
Helix 72	AH9	E	225	234	Right-handed alpha
Helix 73	AI1	E	263	282	Right-handed alpha
Helix 74	AI2	E	309	320	Right-handed alpha
Helix 75	AI3	E	321	324	Right-handed 310
Helix 76	AI4	E	350	355	Right-handed alpha
Helix 77	AI5	E	356	367	Right-handed alpha
Helix 78	AI6	E	381	385	Right-handed 310
Helix 79	AI7	E	392	405	Right-handed alpha
Helix 80	AI8	E	414	419	Right-handed alpha
Helix 81	AI9	E	420	451	Right-handed alpha
Helix 82	AJ1	E	458	463	Right-handed alpha

There are 39 sheets in PDB entry 8J53. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	96	101	anti-parallel
Strand 3	A	89	93	anti-parallel
Strand 4	A	56	60	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	69	76	anti-parallel
Strand 3	A	80	83	anti-parallel
Strand 4	A	109	110	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	69	76	anti-parallel
Strand 3	A	332	333	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	A	341	343	parallel
Strand 3	A	326	329	parallel
Strand 4	A	285	288	parallel
Strand 5	A	212	217	parallel
Strand 6	A	175	178	parallel
Strand 7	A	143	145	parallel
Strand 8	A	410	411	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	254	258	anti-parallel
Strand 3	A	248	251	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	240	first strand
Strand 2	A	301	302	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	457	first strand
Strand 2	A	475	477	anti-parallel
Strand 3	A	481	483	anti-parallel
Strand 4	A	527	530	anti-parallel
Strand 5	A	492	504	anti-parallel
Strand 6	A	509	519	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	96	101	anti-parallel
Strand 3	B	89	93	anti-parallel
Strand 4	B	56	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	69	76	anti-parallel
Strand 3	B	80	83	anti-parallel
Strand 4	B	109	110	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	69	76	anti-parallel
Strand 3	B	332	333	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	329	first strand
Strand 2	B	285	288	parallel
Strand 3	B	212	217	parallel
Strand 4	B	175	178	parallel
Strand 5	B	143	145	parallel
Strand 6	B	410	411	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	221	first strand
Strand 2	B	254	258	anti-parallel
Strand 3	B	248	251	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	240	first strand
Strand 2	B	301	302	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	343	first strand
Strand 2	B	372	373	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	457	first strand
Strand 2	B	475	477	anti-parallel
Strand 3	B	481	483	anti-parallel
Strand 4	B	527	532	anti-parallel
Strand 5	B	495	504	anti-parallel
Strand 6	B	509	516	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	96	101	anti-parallel
Strand 3	C	89	93	anti-parallel
Strand 4	C	56	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	43	first strand
Strand 2	C	69	76	anti-parallel
Strand 3	C	80	83	anti-parallel
Strand 4	C	109	110	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	43	first strand
Strand 2	C	69	76	anti-parallel
Strand 3	C	332	333	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	328	first strand
Strand 2	C	285	288	parallel
Strand 3	C	212	217	parallel
Strand 4	C	175	178	parallel
Strand 5	C	143	145	parallel
Strand 6	C	410	411	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	221	first strand
Strand 2	C	254	258	anti-parallel
Strand 3	C	249	251	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	240	first strand
Strand 2	C	301	302	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	343	first strand
Strand 2	C	372	373	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	457	first strand
Strand 2	C	475	477	anti-parallel
Strand 3	C	481	483	anti-parallel
Strand 4	C	527	532	anti-parallel
Strand 5	C	492	504	anti-parallel
Strand 6	C	509	519	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	31	first strand
Strand 2	D	96	101	anti-parallel
Strand 3	D	89	93	anti-parallel
Strand 4	D	56	60	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	43	first strand
Strand 2	D	69	76	anti-parallel
Strand 3	D	80	83	anti-parallel
Strand 4	D	109	110	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	43	first strand
Strand 2	D	69	76	anti-parallel
Strand 3	D	332	333	parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	329	first strand
Strand 2	D	285	288	parallel
Strand 3	D	212	217	parallel
Strand 4	D	175	178	parallel
Strand 5	D	143	145	parallel
Strand 6	D	410	411	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	221	first strand
Strand 2	D	254	258	anti-parallel
Strand 3	D	248	251	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	240	first strand
Strand 2	D	301	302	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	343	first strand
Strand 2	D	372	373	parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	456	457	first strand
Strand 2	D	475	477	anti-parallel
Strand 3	D	481	483	anti-parallel
Strand 4	D	527	530	anti-parallel
Strand 5	D	492	504	anti-parallel
Strand 6	D	509	519	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	31	first strand
Strand 2	E	96	101	anti-parallel
Strand 3	E	89	93	anti-parallel
Strand 4	E	56	60	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	43	first strand
Strand 2	E	69	76	anti-parallel
Strand 3	E	80	83	anti-parallel
Strand 4	E	109	110	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	43	first strand
Strand 2	E	69	76	anti-parallel
Strand 3	E	332	333	parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	326	329	first strand
Strand 2	E	285	288	parallel
Strand 3	E	212	217	parallel
Strand 4	E	175	178	parallel
Strand 5	E	143	145	parallel
Strand 6	E	410	411	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	221	first strand
Strand 2	E	254	258	anti-parallel
Strand 3	E	248	251	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	240	first strand
Strand 2	E	301	302	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	342	343	first strand
Strand 2	E	372	373	parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	456	457	first strand
Strand 2	E	475	477	anti-parallel
Strand 3	E	481	483	anti-parallel
Strand 4	E	527	532	anti-parallel
Strand 5	E	495	504	anti-parallel
Strand 6	E	509	516	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J53

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J53