Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J5J entry

There are 2 chains in PDB entry 8J5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 17SER 208
E
 GLN 21SER 145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8J5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 25Right-handed alpha
Helix 2
AA2
A
31 35Right-handed 310
Helix 3
AA3
A
46 52Right-handed alpha
Helix 4
AA4
A
67 71Right-handed 310
Helix 5
AA5
A
87 92Right-handed 310
Helix 6
AA6
A
98 104Right-handed alpha
Helix 7
AA7
A
120 125Right-handed alpha
Helix 8
AA8
E
79 82Right-handed 310
Helix 9
AA9
E
104 108Right-handed 310
Helix 10
AB1
E
128 132Right-handed 310
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There are 7 sheets in PDB entry 8J5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
76 85anti-parallel
Strand 3
A
185 194anti-parallel
Strand 4
A
113 119anti-parallel
Strand 5
A
56 62anti-parallel
Strand 6
E
122 124anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
202 203parallel
Strand 3
A
73 74anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
170 172anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
166 167anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 25first strand
Strand 2
E
36 42anti-parallel
Strand 3
E
95 100anti-parallel
Strand 4
E
85 90anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
29 30first strand
Strand 2
E
139 143parallel
Strand 3
E
109 117anti-parallel
Strand 4
E
50 57anti-parallel
Strand 5
E
64 69anti-parallel
Strand 6
E
75 77anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
29 30first strand
Strand 2
E
139 143parallel
Strand 3
E
109 117anti-parallel
Strand 4
E
134 135anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il