Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J5P entry

There are 36 chains in PDB entry 8J5P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	ASN 7	ARG 55
1	ARG 4	ALA 41
2	ASN 7	ARG 55
3	ARG 4	ALA 41
4	ASN 7	ARG 55
5	ARG 4	ALA 41
6	ASN 7	ARG 55
7	ARG 4	ALA 41
8	ASN 7	ARG 55
9	ARG 4	ALA 41
A	ARG 4	ALA 41
B	ASN 7	ARG 55
C	PRO 6	PRO 320
D	ARG 4	ALA 41
E	ASN 7	ARG 55
F	ARG 4	ALA 41
G	ASN 7	ARG 55
H	ARG 4	ALA 41
I	ASN 7	ARG 55
J	ARG 4	ALA 41
K	ASN 7	ARG 55
L	ARG 6	ALA 315
M	PRO 335	PHE 640
N	ARG 4	ALA 41
O	ASN 7	ARG 55
P	ARG 4	ALA 41
Q	ASN 7	ARG 55
R	ARG 4	ALA 41
S	ASN 7	ARG 55
T	ARG 4	ALA 41
U	ASN 7	ARG 55
V	ARG 4	ALA 41
W	ASN 7	ARG 55
X	MET 1	SER 26
Y	MET 1	PRO 32
Z	SER 12	ASN 58

There are 78 helices in PDB entry 8J5P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	20	51	Right-handed alpha
Helix 2	AA2	1	6	34	Right-handed alpha
Helix 3	AA3	2	21	51	Right-handed alpha
Helix 4	AA4	3	7	34	Right-handed alpha
Helix 5	AA5	4	21	51	Right-handed alpha
Helix 6	AA6	5	7	33	Right-handed alpha
Helix 7	AA7	6	21	51	Right-handed alpha
Helix 8	AA8	7	7	34	Right-handed alpha
Helix 9	AA9	8	21	51	Right-handed alpha
Helix 10	AB1	9	7	33	Right-handed alpha
Helix 11	AB2	A	7	34	Right-handed alpha
Helix 12	AB3	B	19	51	Right-handed alpha
Helix 13	AB4	C	9	14	Right-handed alpha
Helix 14	AB5	C	15	47	Right-handed alpha
Helix 15	AB6	C	73	85	Right-handed alpha
Helix 16	AB7	C	98	109	Right-handed alpha
Helix 17	AB8	C	109	115	Right-handed alpha
Helix 18	AB9	C	117	121	Right-handed 310
Helix 19	AC1	C	135	156	Right-handed alpha
Helix 20	AC2	C	170	176	Right-handed alpha
Helix 21	AC3	C	218	237	Right-handed alpha
Helix 22	AC4	C	255	274	Right-handed alpha
Helix 23	AC5	C	285	289	Right-handed 310
Helix 24	AC6	C	292	297	Right-handed alpha
Helix 25	AC7	D	7	33	Right-handed alpha
Helix 26	AC8	E	19	51	Right-handed alpha
Helix 27	AC9	F	7	33	Right-handed alpha
Helix 28	AD1	G	21	51	Right-handed alpha
Helix 29	AD2	H	7	34	Right-handed alpha
Helix 30	AD3	I	19	51	Right-handed alpha
Helix 31	AD4	J	7	34	Right-handed alpha
Helix 32	AD5	K	19	51	Right-handed alpha
Helix 33	AD6	L	35	44	Right-handed alpha
Helix 34	AD7	L	49	55	Right-handed alpha
Helix 35	AD8	L	70	93	Right-handed alpha
Helix 36	AD9	L	109	113	Right-handed 310
Helix 37	AE1	L	122	150	Right-handed alpha
Helix 38	AE2	L	154	172	Right-handed alpha
Helix 39	AE3	L	172	179	Right-handed alpha
Helix 40	AE4	L	191	203	Right-handed alpha
Helix 41	AE5	L	205	208	Right-handed 310
Helix 42	AE6	L	209	236	Right-handed alpha
Helix 43	AE7	L	244	253	Right-handed alpha
Helix 44	AE8	L	261	288	Right-handed alpha
Helix 45	AE9	L	291	296	Right-handed alpha
Helix 46	AF1	L	297	302	Right-handed 310
Helix 47	AF2	L	310	314	Right-handed 310
Helix 48	AF3	M	337	344	Right-handed alpha
Helix 49	AF4	M	359	366	Right-handed alpha
Helix 50	AF5	M	380	400	Right-handed alpha
Helix 51	AF6	M	404	411	Right-handed alpha
Helix 52	AF7	M	412	415	Right-handed 310
Helix 53	AF8	M	435	464	Right-handed alpha
Helix 54	AF9	M	467	485	Right-handed alpha
Helix 55	AG1	M	493	497	Right-handed 310
Helix 56	AG2	M	503	516	Right-handed alpha
Helix 57	AG3	M	518	521	Right-handed 310
Helix 58	AG4	M	522	549	Right-handed alpha
Helix 59	AG5	M	550	553	Right-handed 310
Helix 60	AG6	M	556	561	Right-handed alpha
Helix 61	AG7	M	565	580	Right-handed alpha
Helix 62	AG8	M	586	613	Right-handed alpha
Helix 63	AG9	M	616	624	Right-handed alpha
Helix 64	AH1	M	634	639	Right-handed 310
Helix 65	AH2	N	7	33	Right-handed alpha
Helix 66	AH3	O	21	51	Right-handed alpha
Helix 67	AH4	P	7	34	Right-handed alpha
Helix 68	AH5	Q	20	51	Right-handed alpha
Helix 69	AH6	R	7	33	Right-handed alpha
Helix 70	AH7	S	19	51	Right-handed alpha
Helix 71	AH8	T	7	34	Right-handed alpha
Helix 72	AH9	U	21	51	Right-handed alpha
Helix 73	AI1	V	7	33	Right-handed alpha
Helix 74	AI2	W	19	51	Right-handed alpha
Helix 75	AI3	X	2	25	Right-handed alpha
Helix 76	AI4	Y	2	31	Right-handed alpha
Helix 77	AI5	Z	16	47	Right-handed alpha
Helix 78	AI6	Z	53	58	Right-handed alpha

There are 4 sheets in PDB entry 8J5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	7	9	first strand
Strand 2	L	15	17	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	33	34	first strand
Strand 2	Z	49	50	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	62	64	first strand
Strand 2	L	67	69	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	350	351	first strand
Strand 2	M	373	374	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J5P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5P