Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J5Q entry

There are 5 chains in PDB entry 8J5Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 65	ARG 591
B	MET 1	SER 325
C	ARG 8	PRO 281
D	SER 2	GLY 612
E	UNK 1	UNK 9

There are 71 helices in PDB entry 8J5Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	111	119	Right-handed alpha
Helix 2	AA2	A	171	182	Right-handed alpha
Helix 3	AA3	A	220	226	Right-handed 310
Helix 4	AA4	A	235	240	Right-handed 310
Helix 5	AA5	A	241	248	Right-handed alpha
Helix 6	AA6	A	296	300	Right-handed 310
Helix 7	AA7	A	316	326	Right-handed alpha
Helix 8	AA8	A	350	353	Right-handed 310
Helix 9	AA9	A	354	363	Right-handed alpha
Helix 10	AB1	A	366	375	Right-handed alpha
Helix 11	AB2	A	401	405	Right-handed 310
Helix 12	AB3	A	407	418	Right-handed alpha
Helix 13	AB4	A	443	461	Right-handed alpha
Helix 14	AB5	A	473	478	Right-handed alpha
Helix 15	AB6	A	496	499	Right-handed 310
Helix 16	AB7	A	500	505	Right-handed alpha
Helix 17	AB8	A	518	530	Right-handed alpha
Helix 18	AB9	A	533	552	Right-handed alpha
Helix 19	AC1	B	3	31	Right-handed alpha
Helix 20	AC2	B	34	40	Right-handed alpha
Helix 21	AC3	B	45	56	Right-handed alpha
Helix 22	AC4	B	61	74	Right-handed alpha
Helix 23	AC5	B	87	123	Right-handed alpha
Helix 24	AC6	B	126	142	Right-handed alpha
Helix 25	AC7	B	143	163	Right-handed alpha
Helix 26	AC8	B	181	220	Right-handed alpha
Helix 27	AC9	B	222	230	Right-handed alpha
Helix 28	AD1	B	233	273	Right-handed alpha
Helix 29	AD2	B	276	287	Right-handed alpha
Helix 30	AD3	B	289	319	Right-handed alpha
Helix 31	AD4	C	9	17	Right-handed alpha
Helix 32	AD5	C	18	38	Right-handed alpha
Helix 33	AD6	C	39	42	Right-handed 310
Helix 34	AD7	C	72	110	Right-handed alpha
Helix 35	AD8	C	110	125	Right-handed alpha
Helix 36	AD9	C	128	141	Right-handed alpha
Helix 37	AE1	C	146	155	Right-handed alpha
Helix 38	AE2	C	158	174	Right-handed alpha
Helix 39	AE3	C	175	183	Right-handed alpha
Helix 40	AE4	C	187	195	Right-handed alpha
Helix 41	AE5	C	195	225	Right-handed alpha
Helix 42	AE6	C	235	248	Right-handed alpha
Helix 43	AE7	C	251	280	Right-handed alpha
Helix 44	AE8	D	46	56	Right-handed alpha
Helix 45	AE9	D	79	84	Right-handed alpha
Helix 46	AF1	D	107	118	Right-handed alpha
Helix 47	AF2	D	124	139	Right-handed alpha
Helix 48	AF3	D	143	148	Right-handed alpha
Helix 49	AF4	D	149	150	Right-handed 310
Helix 50	AF5	D	151	155	Right-handed 310
Helix 51	AF6	D	156	170	Right-handed alpha
Helix 52	AF7	D	186	205	Right-handed alpha
Helix 53	AF8	D	214	222	Right-handed alpha
Helix 54	AF9	D	239	245	Right-handed alpha
Helix 55	AG1	D	248	255	Right-handed alpha
Helix 56	AG2	D	296	301	Right-handed 310
Helix 57	AG3	D	319	323	Right-handed 310
Helix 58	AG4	D	327	333	Right-handed alpha
Helix 59	AG5	D	399	409	Right-handed alpha
Helix 60	AG6	D	429	437	Right-handed alpha
Helix 61	AG7	D	446	451	Right-handed alpha
Helix 62	AG8	D	456	468	Right-handed alpha
Helix 63	AG9	D	471	486	Right-handed alpha
Helix 64	AH1	D	496	500	Right-handed 310
Helix 65	AH2	D	501	514	Right-handed alpha
Helix 66	AH3	D	515	517	Right-handed 310
Helix 67	AH4	D	531	550	Right-handed alpha
Helix 68	AH5	D	560	567	Right-handed alpha
Helix 69	AH6	D	584	590	Right-handed alpha
Helix 70	AH7	D	593	602	Right-handed alpha
Helix 71	AH8	D	607	611	Right-handed 310

There are 13 sheets in PDB entry 8J5Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	574	575	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	289	294	parallel
Strand 3	A	271	276	anti-parallel
Strand 4	A	260	266	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	134	136	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	148	first strand
Strand 2	A	153	157	anti-parallel
Strand 3	A	211	216	anti-parallel
Strand 4	A	200	205	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	313	first strand
Strand 2	A	563	567	anti-parallel
Strand 3	A	329	333	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	469	first strand
Strand 2	A	435	441	parallel
Strand 3	A	486	492	parallel
Strand 4	A	339	344	anti-parallel
Strand 5	A	554	559	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	469	first strand
Strand 2	A	435	441	parallel
Strand 3	A	486	492	parallel
Strand 4	E	3	5	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	423	first strand
Strand 2	A	426	429	anti-parallel
Strand 3	A	432	433	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	570	571	first strand
Strand 2	A	587	588	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	31	first strand
Strand 2	D	5	14	anti-parallel
Strand 3	D	62	70	anti-parallel
Strand 4	D	73	74	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	94	first strand
Strand 2	D	175	179	parallel
Strand 3	D	207	212	parallel
Strand 4	D	36	40	parallel
Strand 5	D	224	229	parallel
Strand 6	D	232	238	anti-parallel
Strand 7	D	313	315	anti-parallel
Strand 8	D	307	310	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	385	first strand
Strand 2	D	348	363	anti-parallel
Strand 3	D	415	420	anti-parallel
Strand 4	D	423	424	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	443	first strand
Strand 2	D	520	524	parallel
Strand 3	D	553	557	parallel
Strand 4	D	389	393	parallel
Strand 5	D	569	574	parallel
Strand 6	D	577	583	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J5Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5Q