Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J5R entry

There are 4 chains in PDB entry 8J5R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 73	ARG 591
B	MET 1	SER 325
C	ARG 8	ASP 280
D	MET 1	ALA 609

There are 72 helices in PDB entry 8J5R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	111	120	Right-handed alpha
Helix 2	AA2	A	171	184	Right-handed alpha
Helix 3	AA3	A	222	226	Right-handed 310
Helix 4	AA4	A	235	240	Right-handed alpha
Helix 5	AA5	A	241	248	Right-handed alpha
Helix 6	AA6	A	316	325	Right-handed alpha
Helix 7	AA7	A	354	362	Right-handed alpha
Helix 8	AA8	A	363	365	Right-handed 310
Helix 9	AA9	A	366	375	Right-handed alpha
Helix 10	AB1	A	410	419	Right-handed alpha
Helix 11	AB2	A	444	459	Right-handed alpha
Helix 12	AB3	A	470	475	Right-handed 310
Helix 13	AB4	A	496	500	Right-handed 310
Helix 14	AB5	A	518	526	Right-handed alpha
Helix 15	AB6	A	533	550	Right-handed alpha
Helix 16	AB7	B	6	31	Right-handed alpha
Helix 17	AB8	B	45	57	Right-handed alpha
Helix 18	AB9	B	61	74	Right-handed alpha
Helix 19	AC1	B	87	123	Right-handed alpha
Helix 20	AC2	B	126	142	Right-handed alpha
Helix 21	AC3	B	143	163	Right-handed alpha
Helix 22	AC4	B	180	220	Right-handed alpha
Helix 23	AC5	B	222	230	Right-handed alpha
Helix 24	AC6	B	233	241	Right-handed alpha
Helix 25	AC7	B	242	251	Right-handed alpha
Helix 26	AC8	B	253	273	Right-handed alpha
Helix 27	AC9	B	276	287	Right-handed alpha
Helix 28	AD1	B	289	319	Right-handed alpha
Helix 29	AD2	B	319	324	Right-handed alpha
Helix 30	AD3	C	9	18	Right-handed alpha
Helix 31	AD4	C	18	38	Right-handed alpha
Helix 32	AD5	C	39	42	Right-handed 310
Helix 33	AD6	C	72	110	Right-handed alpha
Helix 34	AD7	C	111	126	Right-handed alpha
Helix 35	AD8	C	128	141	Right-handed alpha
Helix 36	AD9	C	146	156	Right-handed alpha
Helix 37	AE1	C	161	174	Right-handed alpha
Helix 38	AE2	C	175	183	Right-handed alpha
Helix 39	AE3	C	187	195	Right-handed alpha
Helix 40	AE4	C	196	225	Right-handed alpha
Helix 41	AE5	C	235	244	Right-handed alpha
Helix 42	AE6	C	245	247	Right-handed 310
Helix 43	AE7	C	251	278	Right-handed alpha
Helix 44	AE8	D	47	56	Right-handed alpha
Helix 45	AE9	D	79	84	Right-handed alpha
Helix 46	AF1	D	107	120	Right-handed alpha
Helix 47	AF2	D	121	123	Right-handed 310
Helix 48	AF3	D	124	140	Right-handed alpha
Helix 49	AF4	D	143	148	Right-handed alpha
Helix 50	AF5	D	149	150	Right-handed 310
Helix 51	AF6	D	151	155	Right-handed 310
Helix 52	AF7	D	156	169	Right-handed alpha
Helix 53	AF8	D	186	205	Right-handed alpha
Helix 54	AF9	D	214	222	Right-handed alpha
Helix 55	AG1	D	239	245	Right-handed alpha
Helix 56	AG2	D	248	257	Right-handed alpha
Helix 57	AG3	D	288	292	Right-handed 310
Helix 58	AG4	D	297	302	Right-handed alpha
Helix 59	AG5	D	319	323	Right-handed 310
Helix 60	AG6	D	327	333	Right-handed alpha
Helix 61	AG7	D	400	408	Right-handed alpha
Helix 62	AG8	D	426	428	Right-handed 310
Helix 63	AG9	D	429	437	Right-handed alpha
Helix 64	AH1	D	456	467	Right-handed alpha
Helix 65	AH2	D	471	487	Right-handed alpha
Helix 66	AH3	D	489	495	Right-handed 310
Helix 67	AH4	D	496	500	Right-handed 310
Helix 68	AH5	D	502	514	Right-handed alpha
Helix 69	AH6	D	531	550	Right-handed alpha
Helix 70	AH7	D	560	567	Right-handed alpha
Helix 71	AH8	D	584	590	Right-handed alpha
Helix 72	AH9	D	593	602	Right-handed alpha

There are 9 sheets in PDB entry 8J5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	134	136	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	146	first strand
Strand 2	A	153	157	anti-parallel
Strand 3	A	211	216	anti-parallel
Strand 4	A	200	205	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	265	first strand
Strand 2	A	272	276	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	333	first strand
Strand 2	A	563	567	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	467	first strand
Strand 2	A	435	439	parallel
Strand 3	A	486	490	parallel
Strand 4	A	339	344	anti-parallel
Strand 5	A	554	559	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	31	first strand
Strand 2	D	5	13	anti-parallel
Strand 3	D	63	70	anti-parallel
Strand 4	D	73	74	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	94	first strand
Strand 2	D	175	179	parallel
Strand 3	D	207	211	parallel
Strand 4	D	36	40	parallel
Strand 5	D	224	229	parallel
Strand 6	D	232	238	anti-parallel
Strand 7	D	313	315	anti-parallel
Strand 8	D	307	310	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	385	first strand
Strand 2	D	348	361	anti-parallel
Strand 3	D	415	420	anti-parallel
Strand 4	D	423	424	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	441	443	first strand
Strand 2	D	521	524	parallel
Strand 3	D	553	557	parallel
Strand 4	D	389	393	parallel
Strand 5	D	569	574	parallel
Strand 6	D	577	583	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J5R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5R