Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J5S entry

There are 5 chains in PDB entry 8J5S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 65	ARG 591
B	MET 1	SER 325
C	THR 2	SER 283
D	SER 2	ALA 609
E	UNK 1	UNK 8

There are 73 helices in PDB entry 8J5S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	111	119	Right-handed alpha
Helix 2	AA2	A	171	182	Right-handed alpha
Helix 3	AA3	A	222	226	Right-handed 310
Helix 4	AA4	A	235	239	Right-handed 310
Helix 5	AA5	A	241	248	Right-handed alpha
Helix 6	AA6	A	296	299	Right-handed 310
Helix 7	AA7	A	300	306	Right-handed alpha
Helix 8	AA8	A	316	325	Right-handed alpha
Helix 9	AA9	A	354	363	Right-handed alpha
Helix 10	AB1	A	366	375	Right-handed alpha
Helix 11	AB2	A	401	405	Right-handed 310
Helix 12	AB3	A	407	417	Right-handed alpha
Helix 13	AB4	A	445	459	Right-handed alpha
Helix 14	AB5	A	474	479	Right-handed alpha
Helix 15	AB6	A	496	498	Right-handed 310
Helix 16	AB7	A	499	505	Right-handed alpha
Helix 17	AB8	A	518	530	Right-handed alpha
Helix 18	AB9	A	533	550	Right-handed alpha
Helix 19	AC1	B	5	30	Right-handed alpha
Helix 20	AC2	B	34	39	Right-handed alpha
Helix 21	AC3	B	45	55	Right-handed alpha
Helix 22	AC4	B	61	74	Right-handed alpha
Helix 23	AC5	B	87	123	Right-handed alpha
Helix 24	AC6	B	128	141	Right-handed alpha
Helix 25	AC7	B	143	163	Right-handed alpha
Helix 26	AC8	B	180	221	Right-handed alpha
Helix 27	AC9	B	222	229	Right-handed alpha
Helix 28	AD1	B	233	241	Right-handed alpha
Helix 29	AD2	B	241	247	Right-handed alpha
Helix 30	AD3	B	248	252	Right-handed 310
Helix 31	AD4	B	253	273	Right-handed alpha
Helix 32	AD5	B	276	287	Right-handed alpha
Helix 33	AD6	B	289	319	Right-handed alpha
Helix 34	AD7	C	7	17	Right-handed alpha
Helix 35	AD8	C	18	38	Right-handed alpha
Helix 36	AD9	C	39	42	Right-handed 310
Helix 37	AE1	C	72	110	Right-handed alpha
Helix 38	AE2	C	110	125	Right-handed alpha
Helix 39	AE3	C	128	137	Right-handed alpha
Helix 40	AE4	C	146	155	Right-handed alpha
Helix 41	AE5	C	158	174	Right-handed alpha
Helix 42	AE6	C	176	185	Right-handed alpha
Helix 43	AE7	C	187	196	Right-handed alpha
Helix 44	AE8	C	202	225	Right-handed alpha
Helix 45	AE9	C	235	244	Right-handed alpha
Helix 46	AF1	C	245	247	Right-handed 310
Helix 47	AF2	C	251	280	Right-handed alpha
Helix 48	AF3	D	47	52	Right-handed alpha
Helix 49	AF4	D	82	87	Right-handed alpha
Helix 50	AF5	D	108	120	Right-handed alpha
Helix 51	AF6	D	126	140	Right-handed alpha
Helix 52	AF7	D	143	148	Right-handed alpha
Helix 53	AF8	D	149	150	Right-handed 310
Helix 54	AF9	D	151	155	Right-handed 310
Helix 55	AG1	D	159	170	Right-handed alpha
Helix 56	AG2	D	186	204	Right-handed alpha
Helix 57	AG3	D	214	222	Right-handed alpha
Helix 58	AG4	D	239	243	Right-handed alpha
Helix 59	AG5	D	248	256	Right-handed alpha
Helix 60	AG6	D	327	332	Right-handed alpha
Helix 61	AG7	D	399	409	Right-handed alpha
Helix 62	AG8	D	419	423	Right-handed 310
Helix 63	AG9	D	429	436	Right-handed alpha
Helix 64	AH1	D	446	451	Right-handed alpha
Helix 65	AH2	D	456	462	Right-handed alpha
Helix 66	AH3	D	462	467	Right-handed alpha
Helix 67	AH4	D	472	486	Right-handed alpha
Helix 68	AH5	D	489	495	Right-handed 310
Helix 69	AH6	D	496	500	Right-handed 310
Helix 70	AH7	D	501	514	Right-handed alpha
Helix 71	AH8	D	531	550	Right-handed alpha
Helix 72	AH9	D	559	567	Right-handed alpha
Helix 73	AI1	D	593	602	Right-handed alpha

There are 12 sheets in PDB entry 8J5S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	289	294	parallel
Strand 3	A	271	276	anti-parallel
Strand 4	A	260	266	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	134	136	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	146	first strand
Strand 2	A	153	158	anti-parallel
Strand 3	A	211	216	anti-parallel
Strand 4	A	200	205	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	313	first strand
Strand 2	A	563	567	anti-parallel
Strand 3	A	329	333	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	469	first strand
Strand 2	A	435	441	parallel
Strand 3	A	486	492	parallel
Strand 4	A	338	344	anti-parallel
Strand 5	A	554	559	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	469	first strand
Strand 2	A	435	441	parallel
Strand 3	A	486	492	parallel
Strand 4	E	3	5	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	429	first strand
Strand 2	A	432	433	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	570	571	first strand
Strand 2	A	587	588	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	29	first strand
Strand 2	D	7	14	anti-parallel
Strand 3	D	62	64	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	175	179	parallel
Strand 3	D	207	211	parallel
Strand 4	D	36	41	parallel
Strand 5	D	224	228	parallel
Strand 6	D	233	238	anti-parallel
Strand 7	D	313	315	anti-parallel
Strand 8	D	307	310	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	355	359	first strand
Strand 2	D	374	380	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	443	first strand
Strand 2	D	520	524	parallel
Strand 3	D	552	556	parallel
Strand 4	D	389	393	parallel
Strand 5	D	569	574	parallel
Strand 6	D	577	582	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J5S

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5S