Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J5T entry

There are 4 chains in PDB entry 8J5T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 73	ARG 591
B	MET 1	SER 325
C	MET 1	ARG 288
D	SER 2	ALA 609

There are 70 helices in PDB entry 8J5T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	85	Right-handed 310
Helix 2	AA2	A	111	119	Right-handed alpha
Helix 3	AA3	A	171	182	Right-handed alpha
Helix 4	AA4	A	196	198	Right-handed 310
Helix 5	AA5	A	223	227	Right-handed 310
Helix 6	AA6	A	241	248	Right-handed alpha
Helix 7	AA7	A	296	306	Right-handed alpha
Helix 8	AA8	A	316	325	Right-handed alpha
Helix 9	AA9	A	350	353	Right-handed 310
Helix 10	AB1	A	354	362	Right-handed alpha
Helix 11	AB2	A	363	365	Right-handed 310
Helix 12	AB3	A	366	375	Right-handed alpha
Helix 13	AB4	A	407	417	Right-handed alpha
Helix 14	AB5	A	442	459	Right-handed alpha
Helix 15	AB6	A	497	505	Right-handed alpha
Helix 16	AB7	A	518	529	Right-handed alpha
Helix 17	AB8	A	535	550	Right-handed alpha
Helix 18	AB9	B	2	31	Right-handed alpha
Helix 19	AC1	B	34	39	Right-handed alpha
Helix 20	AC2	B	46	56	Right-handed alpha
Helix 21	AC3	B	61	74	Right-handed alpha
Helix 22	AC4	B	87	123	Right-handed alpha
Helix 23	AC5	B	126	141	Right-handed alpha
Helix 24	AC6	B	143	163	Right-handed alpha
Helix 25	AC7	B	182	192	Right-handed alpha
Helix 26	AC8	B	192	219	Right-handed alpha
Helix 27	AC9	B	222	231	Right-handed alpha
Helix 28	AD1	B	233	247	Right-handed alpha
Helix 29	AD2	B	249	258	Right-handed alpha
Helix 30	AD3	B	265	272	Right-handed alpha
Helix 31	AD4	B	278	288	Right-handed alpha
Helix 32	AD5	B	289	305	Right-handed alpha
Helix 33	AD6	B	309	319	Right-handed alpha
Helix 34	AD7	C	6	16	Right-handed alpha
Helix 35	AD8	C	18	38	Right-handed alpha
Helix 36	AD9	C	72	110	Right-handed alpha
Helix 37	AE1	C	111	127	Right-handed alpha
Helix 38	AE2	C	128	137	Right-handed alpha
Helix 39	AE3	C	142	156	Right-handed alpha
Helix 40	AE4	C	158	173	Right-handed alpha
Helix 41	AE5	C	175	184	Right-handed alpha
Helix 42	AE6	C	187	225	Right-handed alpha
Helix 43	AE7	C	235	244	Right-handed alpha
Helix 44	AE8	C	245	248	Right-handed 310
Helix 45	AE9	C	250	280	Right-handed alpha
Helix 46	AF1	D	46	56	Right-handed alpha
Helix 47	AF2	D	81	85	Right-handed 310
Helix 48	AF3	D	107	119	Right-handed alpha
Helix 49	AF4	D	125	140	Right-handed alpha
Helix 50	AF5	D	143	148	Right-handed alpha
Helix 51	AF6	D	149	150	Right-handed 310
Helix 52	AF7	D	151	155	Right-handed 310
Helix 53	AF8	D	158	169	Right-handed alpha
Helix 54	AF9	D	186	203	Right-handed alpha
Helix 55	AG1	D	215	222	Right-handed alpha
Helix 56	AG2	D	239	246	Right-handed alpha
Helix 57	AG3	D	248	256	Right-handed alpha
Helix 58	AG4	D	288	292	Right-handed 310
Helix 59	AG5	D	297	301	Right-handed 310
Helix 60	AG6	D	327	332	Right-handed alpha
Helix 61	AG7	D	399	409	Right-handed alpha
Helix 62	AG8	D	430	437	Right-handed alpha
Helix 63	AG9	D	456	463	Right-handed alpha
Helix 64	AH1	D	464	467	Right-handed 310
Helix 65	AH2	D	473	486	Right-handed alpha
Helix 66	AH3	D	496	500	Right-handed 310
Helix 67	AH4	D	503	514	Right-handed alpha
Helix 68	AH5	D	531	548	Right-handed alpha
Helix 69	AH6	D	561	567	Right-handed alpha
Helix 70	AH7	D	595	601	Right-handed alpha

There are 12 sheets in PDB entry 8J5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	289	294	parallel
Strand 3	A	271	276	anti-parallel
Strand 4	A	260	266	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	134	136	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	146	first strand
Strand 2	A	153	158	anti-parallel
Strand 3	A	211	216	anti-parallel
Strand 4	A	200	205	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	313	first strand
Strand 2	A	564	567	anti-parallel
Strand 3	A	329	332	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	468	first strand
Strand 2	A	437	440	parallel
Strand 3	A	486	487	parallel
Strand 4	A	338	344	anti-parallel
Strand 5	A	490	492	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	468	first strand
Strand 2	A	437	440	parallel
Strand 3	A	486	487	parallel
Strand 4	A	338	344	anti-parallel
Strand 5	A	554	559	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	423	first strand
Strand 2	A	426	428	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	570	571	first strand
Strand 2	A	587	588	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	31	first strand
Strand 2	D	5	14	anti-parallel
Strand 3	D	67	69	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	175	179	parallel
Strand 3	D	207	211	parallel
Strand 4	D	36	41	parallel
Strand 5	D	224	229	parallel
Strand 6	D	232	238	anti-parallel
Strand 7	D	313	315	anti-parallel
Strand 8	D	307	310	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	384	first strand
Strand 2	D	350	363	anti-parallel
Strand 3	D	417	420	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	441	443	first strand
Strand 2	D	520	524	parallel
Strand 3	D	552	556	parallel
Strand 4	D	390	394	parallel
Strand 5	D	569	574	parallel
Strand 6	D	577	583	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J5T

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5T