Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J5U entry

There are 2 chains in PDB entry 8J5U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 65HIS 598
B
 ALA 1PRO 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8J5U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 85Right-handed 310
Helix 2
AA2
A
111 119Right-handed alpha
Helix 3
AA3
A
171 183Right-handed alpha
Helix 4
AA4
A
196 198Right-handed 310
Helix 5
AA5
A
222 226Right-handed 310
Helix 6
AA6
A
235 240Right-handed alpha
Helix 7
AA7
A
241 248Right-handed alpha
Helix 8
AA8
A
296 298Right-handed 310
Helix 9
AA9
A
299 306Right-handed alpha
Helix 10
AB1
A
316 326Right-handed alpha
Helix 11
AB2
A
350 353Right-handed 310
Helix 12
AB3
A
354 363Right-handed alpha
Helix 13
AB4
A
366 376Right-handed alpha
Helix 14
AB5
A
401 405Right-handed 310
Helix 15
AB6
A
407 418Right-handed alpha
Helix 16
AB7
A
443 459Right-handed alpha
Helix 17
AB8
A
473 478Right-handed alpha
Helix 18
AB9
A
479 482Right-handed 310
Helix 19
AC1
A
496 498Right-handed 310
Helix 20
AC2
A
499 505Right-handed alpha
Helix 21
AC3
A
518 531Right-handed alpha
Helix 22
AC4
A
533 551Right-handed alpha
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There are 8 sheets in PDB entry 8J5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 95first strand
Strand 2
A
289 294parallel
Strand 3
A
271 276anti-parallel
Strand 4
A
260 266anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
134 136anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 148first strand
Strand 2
A
153 158anti-parallel
Strand 3
A
211 216anti-parallel
Strand 4
A
200 205anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 313first strand
Strand 2
A
563 567anti-parallel
Strand 3
A
329 333anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 469first strand
Strand 2
A
435 441parallel
Strand 3
A
486 492parallel
Strand 4
A
338 344anti-parallel
Strand 5
A
554 559anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 469first strand
Strand 2
A
435 441parallel
Strand 3
A
486 492parallel
Strand 4
B
4 5anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
A
432 433anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 571first strand
Strand 2
A
587 588anti-parallel
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