Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J5V entry

There is 1 chain in PDB entry 8J5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2LEU 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8J5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 22Right-handed alpha
Helix 2
AA2
A
68 83Right-handed alpha
Helix 3
AA3
A
91 95Right-handed 310
Helix 4
AA4
A
96 101Right-handed 310
Helix 5
AA5
A
108 114Right-handed alpha
Helix 6
AA6
A
127 132Right-handed 310
Helix 7
AA7
A
133 144Right-handed alpha
Helix 8
AA8
A
159 174Right-handed alpha
Helix 9
AA9
A
176 186Right-handed alpha
Helix 10
AB1
A
187 190Right-handed 310
Helix 11
AB2
A
198 205Right-handed 310
Helix 12
AB3
A
251 257Right-handed alpha
Helix 13
AB4
A
267 280Right-handed alpha
Helix 14
AB5
A
285 294Right-handed alpha
Helix 15
AB6
A
367 381Right-handed alpha
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There are 3 sheets in PDB entry 8J5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
39 47anti-parallel
Strand 3
A
29 36anti-parallel
Strand 4
A
351 357anti-parallel
Strand 5
A
342 346anti-parallel
Strand 6
A
333 336anti-parallel
Strand 7
A
315 316anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
265 266anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 300first strand
Strand 2
A
307 310anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il