Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J5Y entry

There are 4 chains in PDB entry 8J5Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 65	LYS 618
C	ILE 2	ASP 167
D	ILE 2	ASP 167
B	LEU 65	LYS 618

There are 39 helices in PDB entry 8J5Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	174	176	Right-handed 310
Helix 2	AA2	A	177	182	Right-handed alpha
Helix 3	AA3	A	183	188	Right-handed 310
Helix 4	AA4	A	219	235	Right-handed alpha
Helix 5	AA5	A	251	270	Right-handed alpha
Helix 6	AA6	A	329	332	Right-handed 310
Helix 7	AA7	A	333	351	Right-handed alpha
Helix 8	AA8	A	368	381	Right-handed alpha
Helix 9	AA9	A	400	405	Right-handed alpha
Helix 10	AB1	A	435	449	Right-handed alpha
Helix 11	AB2	A	491	494	Right-handed 310
Helix 12	AB3	A	495	500	Right-handed alpha
Helix 13	AB4	A	562	567	Right-handed alpha
Helix 14	AB5	A	583	588	Right-handed alpha
Helix 15	AB6	C	11	23	Right-handed alpha
Helix 16	AB7	C	34	48	Right-handed alpha
Helix 17	AB8	C	53	69	Right-handed alpha
Helix 18	AB9	C	81	101	Right-handed alpha
Helix 19	AC1	C	111	120	Right-handed alpha
Helix 20	AC2	C	122	126	Right-handed 310
Helix 21	AC3	C	127	134	Right-handed alpha
Helix 22	AC4	C	140	159	Right-handed alpha
Helix 23	AC5	D	11	23	Right-handed alpha
Helix 24	AC6	D	33	48	Right-handed alpha
Helix 25	AC7	D	53	70	Right-handed alpha
Helix 26	AC8	D	81	101	Right-handed alpha
Helix 27	AC9	D	111	119	Right-handed alpha
Helix 28	AD1	D	122	126	Right-handed 310
Helix 29	AD2	D	140	159	Right-handed alpha
Helix 30	AD3	B	177	182	Right-handed alpha
Helix 31	AD4	B	219	235	Right-handed alpha
Helix 32	AD5	B	251	270	Right-handed alpha
Helix 33	AD6	B	333	351	Right-handed alpha
Helix 34	AD7	B	368	381	Right-handed alpha
Helix 35	AD8	B	389	393	Right-handed 310
Helix 36	AD9	B	435	448	Right-handed alpha
Helix 37	AE1	B	484	488	Right-handed 310
Helix 38	AE2	B	491	500	Right-handed alpha
Helix 39	AE3	B	583	588	Right-handed alpha

There are 15 sheets in PDB entry 8J5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	91	98	anti-parallel
Strand 3	A	204	206	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	91	98	anti-parallel
Strand 3	A	117	122	anti-parallel
Strand 4	A	305	308	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	103	106	anti-parallel
Strand 3	A	131	134	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	360	first strand
Strand 2	A	241	244	parallel
Strand 3	A	384	386	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	281	first strand
Strand 2	A	295	300	anti-parallel
Strand 3	A	317	323	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	470	first strand
Strand 2	A	551	555	anti-parallel
Strand 3	A	535	546	anti-parallel
Strand 4	A	503	509	anti-parallel
Strand 5	A	572	577	anti-parallel
Strand 6	A	481	482	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	520	first strand
Strand 2	A	523	525	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	606	first strand
Strand 2	C	5	6	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	B	605	606	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	169	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	204	206	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	169	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	118	122	anti-parallel
Strand 4	B	305	308	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	112	first strand
Strand 2	B	103	106	anti-parallel
Strand 3	B	131	134	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	244	first strand
Strand 2	B	357	360	parallel
Strand 3	B	278	281	parallel
Strand 4	B	295	300	anti-parallel
Strand 5	B	317	323	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	470	first strand
Strand 2	B	551	555	anti-parallel
Strand 3	B	535	546	anti-parallel
Strand 4	B	503	508	anti-parallel
Strand 5	B	572	576	anti-parallel
Strand 6	B	477	482	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	520	first strand
Strand 2	B	523	526	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J5Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5Y