Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J5Z entry

There are 4 chains in PDB entry 8J5Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 764
B	MET 1	GLY 764
C	MET 1	GLY 764
D	MET 1	GLY 764

There are132 helices in PDB entry 8J5Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	56	Right-handed alpha
Helix 2	AA2	A	64	75	Right-handed alpha
Helix 3	AA3	A	93	112	Right-handed alpha
Helix 4	AA4	A	128	139	Right-handed alpha
Helix 5	AA5	A	141	146	Right-handed alpha
Helix 6	AA6	A	147	161	Right-handed alpha
Helix 7	AA7	A	178	191	Right-handed alpha
Helix 8	AA8	A	202	212	Right-handed alpha
Helix 9	AA9	A	220	230	Right-handed alpha
Helix 10	AB1	A	234	238	Right-handed 310
Helix 11	AB2	A	242	247	Right-handed 310
Helix 12	AB3	A	260	277	Right-handed alpha
Helix 13	AB4	A	283	294	Right-handed alpha
Helix 14	AB5	A	320	335	Right-handed alpha
Helix 15	AB6	A	343	365	Right-handed alpha
Helix 16	AB7	A	371	386	Right-handed alpha
Helix 17	AB8	A	390	398	Right-handed alpha
Helix 18	AB9	A	399	401	Right-handed 310
Helix 19	AC1	A	417	432	Right-handed alpha
Helix 20	AC2	A	439	453	Right-handed alpha
Helix 21	AC3	A	486	502	Right-handed alpha
Helix 22	AC4	A	504	509	Right-handed alpha
Helix 23	AC5	A	515	527	Right-handed alpha
Helix 24	AC6	A	543	550	Right-handed 310
Helix 25	AC7	A	564	582	Right-handed alpha
Helix 26	AC8	A	586	604	Right-handed alpha
Helix 27	AC9	A	620	631	Right-handed alpha
Helix 28	AD1	A	632	634	Right-handed 310
Helix 29	AD2	A	642	653	Right-handed alpha
Helix 30	AD3	A	665	670	Right-handed alpha
Helix 31	AD4	A	681	694	Right-handed alpha
Helix 32	AD5	A	702	714	Right-handed alpha
Helix 33	AD6	A	741	758	Right-handed alpha
Helix 34	AD7	B	42	56	Right-handed alpha
Helix 35	AD8	B	64	75	Right-handed alpha
Helix 36	AD9	B	93	112	Right-handed alpha
Helix 37	AE1	B	128	139	Right-handed alpha
Helix 38	AE2	B	141	146	Right-handed alpha
Helix 39	AE3	B	147	161	Right-handed alpha
Helix 40	AE4	B	178	191	Right-handed alpha
Helix 41	AE5	B	202	212	Right-handed alpha
Helix 42	AE6	B	220	230	Right-handed alpha
Helix 43	AE7	B	234	238	Right-handed 310
Helix 44	AE8	B	242	247	Right-handed 310
Helix 45	AE9	B	260	277	Right-handed alpha
Helix 46	AF1	B	283	294	Right-handed alpha
Helix 47	AF2	B	320	335	Right-handed alpha
Helix 48	AF3	B	343	365	Right-handed alpha
Helix 49	AF4	B	371	386	Right-handed alpha
Helix 50	AF5	B	390	398	Right-handed alpha
Helix 51	AF6	B	399	401	Right-handed 310
Helix 52	AF7	B	417	432	Right-handed alpha
Helix 53	AF8	B	439	453	Right-handed alpha
Helix 54	AF9	B	486	502	Right-handed alpha
Helix 55	AG1	B	504	509	Right-handed alpha
Helix 56	AG2	B	515	527	Right-handed alpha
Helix 57	AG3	B	543	550	Right-handed 310
Helix 58	AG4	B	564	582	Right-handed alpha
Helix 59	AG5	B	586	604	Right-handed alpha
Helix 60	AG6	B	620	631	Right-handed alpha
Helix 61	AG7	B	632	634	Right-handed 310
Helix 62	AG8	B	642	653	Right-handed alpha
Helix 63	AG9	B	665	670	Right-handed alpha
Helix 64	AH1	B	681	694	Right-handed alpha
Helix 65	AH2	B	702	714	Right-handed alpha
Helix 66	AH3	B	741	758	Right-handed alpha
Helix 67	AH4	C	42	56	Right-handed alpha
Helix 68	AH5	C	64	75	Right-handed alpha
Helix 69	AH6	C	93	112	Right-handed alpha
Helix 70	AH7	C	128	139	Right-handed alpha
Helix 71	AH8	C	141	146	Right-handed alpha
Helix 72	AH9	C	147	161	Right-handed alpha
Helix 73	AI1	C	178	191	Right-handed alpha
Helix 74	AI2	C	202	212	Right-handed alpha
Helix 75	AI3	C	220	230	Right-handed alpha
Helix 76	AI4	C	234	238	Right-handed 310
Helix 77	AI5	C	242	247	Right-handed 310
Helix 78	AI6	C	260	277	Right-handed alpha
Helix 79	AI7	C	283	294	Right-handed alpha
Helix 80	AI8	C	320	335	Right-handed alpha
Helix 81	AI9	C	343	365	Right-handed alpha
Helix 82	AJ1	C	371	386	Right-handed alpha
Helix 83	AJ2	C	390	398	Right-handed alpha
Helix 84	AJ3	C	399	401	Right-handed 310
Helix 85	AJ4	C	417	432	Right-handed alpha
Helix 86	AJ5	C	439	453	Right-handed alpha
Helix 87	AJ6	C	486	502	Right-handed alpha
Helix 88	AJ7	C	504	509	Right-handed alpha
Helix 89	AJ8	C	515	527	Right-handed alpha
Helix 90	AJ9	C	543	550	Right-handed 310
Helix 91	AK1	C	564	582	Right-handed alpha
Helix 92	AK2	C	586	604	Right-handed alpha
Helix 93	AK3	C	620	631	Right-handed alpha
Helix 94	AK4	C	632	634	Right-handed 310
Helix 95	AK5	C	642	653	Right-handed alpha
Helix 96	AK6	C	665	670	Right-handed alpha
Helix 97	AK7	C	681	694	Right-handed alpha
Helix 98	AK8	C	702	714	Right-handed alpha
Helix 99	AK9	C	741	758	Right-handed alpha
Helix 100	AL1	D	42	56	Right-handed alpha
Helix 101	AL2	D	64	75	Right-handed alpha
Helix 102	AL3	D	93	112	Right-handed alpha
Helix 103	AL4	D	128	139	Right-handed alpha
Helix 104	AL5	D	141	146	Right-handed alpha
Helix 105	AL6	D	147	161	Right-handed alpha
Helix 106	AL7	D	178	191	Right-handed alpha
Helix 107	AL8	D	202	212	Right-handed alpha
Helix 108	AL9	D	220	230	Right-handed alpha
Helix 109	AM1	D	234	238	Right-handed 310
Helix 110	AM2	D	242	247	Right-handed 310
Helix 111	AM3	D	260	277	Right-handed alpha
Helix 112	AM4	D	283	294	Right-handed alpha
Helix 113	AM5	D	320	335	Right-handed alpha
Helix 114	AM6	D	343	365	Right-handed alpha
Helix 115	AM7	D	371	386	Right-handed alpha
Helix 116	AM8	D	390	398	Right-handed alpha
Helix 117	AM9	D	399	401	Right-handed 310
Helix 118	AN1	D	417	432	Right-handed alpha
Helix 119	AN2	D	439	453	Right-handed alpha
Helix 120	AN3	D	486	502	Right-handed alpha
Helix 121	AN4	D	504	509	Right-handed alpha
Helix 122	AN5	D	515	527	Right-handed alpha
Helix 123	AN6	D	543	550	Right-handed 310
Helix 124	AN7	D	564	582	Right-handed alpha
Helix 125	AN8	D	586	604	Right-handed alpha
Helix 126	AN9	D	620	631	Right-handed alpha
Helix 127	AO1	D	632	634	Right-handed 310
Helix 128	AO2	D	642	653	Right-handed alpha
Helix 129	AO3	D	665	670	Right-handed alpha
Helix 130	AO4	D	681	694	Right-handed alpha
Helix 131	AO5	D	702	714	Right-handed alpha
Helix 132	AO6	D	741	758	Right-handed alpha

There are 12 sheets in PDB entry 8J5Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	28	32	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	411	412	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	730	731	first strand
Strand 2	A	735	736	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	28	32	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	404	first strand
Strand 2	B	411	412	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	730	731	first strand
Strand 2	B	735	736	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	28	32	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	411	412	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	730	731	first strand
Strand 2	C	735	736	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	6	first strand
Strand 2	D	28	32	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	404	first strand
Strand 2	D	411	412	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	730	731	first strand
Strand 2	D	735	736	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J5Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J5Z