Analysis of interatomic Contacts of Structural Units in PDB entry:
8J60

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J60 entry

There are 4 chains in PDB entry 8J60 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 60	GLU 589
C	HIS 4	SER 164
D	PRO 5	VAL 162
A	SER 60	PHE 588

There are 40 helices in PDB entry 8J60. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	171	176	Right-handed alpha
Helix 2	AA2	B	178	182	Right-handed 310
Helix 3	AA3	B	225	241	Right-handed alpha
Helix 4	AA4	B	256	269	Right-handed alpha
Helix 5	AA5	B	331	349	Right-handed alpha
Helix 6	AA6	B	367	381	Right-handed alpha
Helix 7	AA7	B	420	434	Right-handed alpha
Helix 8	AA8	B	474	483	Right-handed alpha
Helix 9	AA9	B	493	499	Right-handed alpha
Helix 10	AB1	B	512	519	Right-handed alpha
Helix 11	AB2	B	566	571	Right-handed alpha
Helix 12	AB3	B	572	578	Right-handed alpha
Helix 13	AB4	C	10	13	Right-handed 310
Helix 14	AB5	C	14	24	Right-handed alpha
Helix 15	AB6	C	32	54	Right-handed alpha
Helix 16	AB7	C	57	75	Right-handed alpha
Helix 17	AB8	C	81	101	Right-handed alpha
Helix 18	AB9	C	122	134	Right-handed alpha
Helix 19	AC1	C	139	158	Right-handed alpha
Helix 20	AC2	D	13	24	Right-handed alpha
Helix 21	AC3	D	32	54	Right-handed alpha
Helix 22	AC4	D	57	76	Right-handed alpha
Helix 23	AC5	D	81	101	Right-handed alpha
Helix 24	AC6	D	113	120	Right-handed alpha
Helix 25	AC7	D	122	135	Right-handed alpha
Helix 26	AC8	D	139	158	Right-handed alpha
Helix 27	AC9	A	225	241	Right-handed alpha
Helix 28	AD1	A	256	269	Right-handed alpha
Helix 29	AD2	A	327	330	Right-handed 310
Helix 30	AD3	A	331	350	Right-handed alpha
Helix 31	AD4	A	351	353	Right-handed 310
Helix 32	AD5	A	367	380	Right-handed alpha
Helix 33	AD6	A	392	397	Right-handed alpha
Helix 34	AD7	A	420	434	Right-handed alpha
Helix 35	AD8	A	445	449	Right-handed 310
Helix 36	AD9	A	477	482	Right-handed alpha
Helix 37	AE1	A	493	499	Right-handed 310
Helix 38	AE2	A	512	519	Right-handed alpha
Helix 39	AE3	A	566	571	Right-handed alpha
Helix 40	AE4	A	572	580	Right-handed alpha

There are 16 sheets in PDB entry 8J60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	76	81	anti-parallel
Strand 3	B	158	164	anti-parallel
Strand 4	B	89	99	anti-parallel
Strand 5	B	116	120	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	76	81	anti-parallel
Strand 3	B	158	164	anti-parallel
Strand 4	B	89	99	anti-parallel
Strand 5	B	210	212	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	129	130	anti-parallel
Strand 3	B	101	104	anti-parallel
Strand 4	B	107	110	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	385	387	parallel
Strand 3	B	403	405	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	319	first strand
Strand 2	B	297	301	anti-parallel
Strand 3	B	278	282	anti-parallel
Strand 4	B	357	360	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	437	first strand
Strand 2	B	440	441	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	455	first strand
Strand 2	B	538	542	anti-parallel
Strand 3	B	522	532	anti-parallel
Strand 4	B	486	491	anti-parallel
Strand 5	B	557	560	anti-parallel
Strand 6	B	464	467	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	587	first strand
Strand 2	D	6	7	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	7	first strand
Strand 2	A	586	587	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	81	first strand
Strand 2	A	158	164	anti-parallel
Strand 3	A	93	97	anti-parallel
Strand 4	A	116	118	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	129	130	anti-parallel
Strand 3	A	102	104	anti-parallel
Strand 4	A	107	109	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	210	212	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	221	222	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	386	387	parallel
Strand 3	A	404	405	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	296	301	anti-parallel
Strand 3	A	278	282	anti-parallel
Strand 4	A	357	360	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	467	first strand
Strand 2	A	558	560	parallel
Strand 3	A	486	491	anti-parallel
Strand 4	A	522	532	anti-parallel
Strand 5	A	539	542	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J60

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J60