Analysis of interatomic Contacts of Structural Units in PDB entry:
8J67


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J67 entry

There are 3 chains in PDB entry 8J67 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 48LYS 227
B
 PHE 48LYS 227
C
 THR 47LYS 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8J67. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
172 176Right-handed 310
Helix 2
AA2
A
221 225Right-handed 310
Helix 3
AA3
B
221 225Right-handed 310
Helix 4
AA4
C
221 225Right-handed 310
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There are 6 sheets in PDB entry 8J67. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
208 212anti-parallel
Strand 3
A
70 75anti-parallel
Strand 4
A
151 157anti-parallel
Strand 5
A
163 171anti-parallel
Strand 6
A
181 190anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
196 202anti-parallel
Strand 3
A
80 90anti-parallel
Strand 4
A
99 107anti-parallel
Strand 5
A
123 128anti-parallel
Strand 6
A
135 141anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
208 212anti-parallel
Strand 3
B
70 75anti-parallel
Strand 4
B
151 158anti-parallel
Strand 5
B
163 171anti-parallel
Strand 6
B
181 190anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 60first strand
Strand 2
B
196 202anti-parallel
Strand 3
B
80 90anti-parallel
Strand 4
B
99 107anti-parallel
Strand 5
B
123 129anti-parallel
Strand 6
B
132 141anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 53first strand
Strand 2
C
208 212anti-parallel
Strand 3
C
71 75anti-parallel
Strand 4
C
151 158anti-parallel
Strand 5
C
163 171anti-parallel
Strand 6
C
181 190anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 141first strand
Strand 2
C
123 129anti-parallel
Strand 3
C
99 107anti-parallel
Strand 4
C
80 90anti-parallel
Strand 5
C
196 202anti-parallel
Strand 6
C
59 62anti-parallel
Strand 7
C
216 217anti-parallel
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