Analysis of interatomic Contacts of Structural Units in PDB entry:
8J6D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J6D entry

There are 6 chains in PDB entry 8J6D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	TYR 354
B	LEU 4	ASN 340
C	TRP 18	ILE 450
D	TYR 68	ARG 77
G	SER 8	ARG 62
H	ASP 1	LEU 247

There are 27 helices in PDB entry 8J6D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	33	Right-handed alpha
Helix 2	AA2	A	45	53	Right-handed alpha
Helix 3	AA3	A	208	217	Right-handed 310
Helix 4	AA4	A	245	256	Right-handed alpha
Helix 5	AA5	A	257	261	Right-handed 310
Helix 6	AA6	A	271	280	Right-handed alpha
Helix 7	AA7	A	283	287	Right-handed 310
Helix 8	AA8	A	296	311	Right-handed alpha
Helix 9	AA9	A	329	351	Right-handed alpha
Helix 10	AB1	B	5	26	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	C	20	50	Right-handed alpha
Helix 13	AB4	C	55	85	Right-handed alpha
Helix 14	AB5	C	91	126	Right-handed alpha
Helix 15	AB6	C	126	134	Right-handed alpha
Helix 16	AB7	C	135	154	Right-handed alpha
Helix 17	AB8	C	154	159	Right-handed alpha
Helix 18	AB9	C	332	363	Right-handed alpha
Helix 19	AC1	C	364	370	Right-handed 310
Helix 20	AC2	C	371	403	Right-handed alpha
Helix 21	AC3	C	407	436	Right-handed alpha
Helix 22	AC4	C	439	448	Right-handed alpha
Helix 23	AC5	G	9	24	Right-handed alpha
Helix 24	AC6	G	29	44	Right-handed alpha
Helix 25	AC7	H	53	56	Right-handed 310
Helix 26	AC8	H	87	91	Right-handed 310
Helix 27	AC9	H	220	224	Right-handed 310

There are 14 sheets in PDB entry 8J6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	192	first strand
Strand 2	A	195	201	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	221	227	parallel
Strand 5	A	264	270	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	178	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	240	244	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	275	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	303	307	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	164	first strand
Strand 2	C	171	172	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	118	119	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	93	99	anti-parallel
Strand 5	H	110	111	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	140	141	first strand
Strand 2	H	155	161	anti-parallel
Strand 3	H	211	216	anti-parallel
Strand 4	H	203	208	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	148	first strand
Strand 2	H	243	246	parallel
Strand 3	H	225	231	anti-parallel
Strand 4	H	174	179	anti-parallel
Strand 5	H	186	190	anti-parallel
Strand 6	H	194	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J6D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J6D