Analysis of interatomic Contacts of Structural Units in PDB entry:
8J6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J6E entry

There is 1 chain in PDB entry 8J6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -2ASP 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8J6E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 12Right-handed 310
Helix 2
AA2
A
22 26Right-handed 310
Helix 3
AA3
A
43 52Right-handed alpha
Helix 4
AA4
A
79 83Right-handed 310
Helix 5
AA5
A
108 110Right-handed 310
Helix 6
AA6
A
118 126Right-handed alpha
Helix 7
AA7
A
127 138Right-handed alpha
Helix 8
AA8
A
155 168Right-handed alpha
Helix 9
AA9
A
178 188Right-handed alpha
Helix 10
AB1
A
202 211Right-handed alpha
Helix 11
AB2
A
226 233Right-handed alpha
Helix 12
AB3
A
254 261Right-handed alpha
Helix 13
AB4
A
270 275Right-handed 310
Helix 14
AB5
A
277 294Right-handed alpha
Helix 15
AB6
A
309 319Right-handed alpha
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There are 4 sheets in PDB entry 8J6E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
1 5anti-parallel
Strand 3
A
61 62anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 106first strand
Strand 2
A
32 41anti-parallel
Strand 3
A
66 74anti-parallel
Strand 4
A
86 89anti-parallel
Strand 5
A
111 112anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 106first strand
Strand 2
A
32 41anti-parallel
Strand 3
A
325 329anti-parallel
Strand 4
A
301 306parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
171 176parallel
Strand 3
A
147 150parallel
Strand 4
A
215 220parallel
Strand 5
A
234 242parallel
Strand 6
A
265 267parallel
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