Analysis of interatomic Contacts of Structural Units in PDB entry:
8J6H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J6H entry

There are 4 chains in PDB entry 8J6H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 6THR 449
B
 GLU 8THR 449
C
 ARG 4THR 449
D
 ARG 4THR 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 8J6H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 35Right-handed alpha
Helix 2
AA2
A
36 39Right-handed 310
Helix 3
AA3
A
44 76Right-handed alpha
Helix 4
AA4
A
98 104Right-handed alpha
Helix 5
AA5
A
115 128Right-handed alpha
Helix 6
AA6
A
138 161Right-handed alpha
Helix 7
AA7
A
190 200Right-handed alpha
Helix 8
AA8
A
214 222Right-handed alpha
Helix 9
AA9
A
222 232Right-handed alpha
Helix 10
AB1
A
236 241Right-handed alpha
Helix 11
AB2
A
271 276Right-handed alpha
Helix 12
AB3
A
277 282Right-handed alpha
Helix 13
AB4
A
284 306Right-handed alpha
Helix 14
AB5
A
342 358Right-handed alpha
Helix 15
AB6
A
360 365Right-handed alpha
Helix 16
AB7
A
383 396Right-handed alpha
Helix 17
AB8
A
402 404Right-handed 310
Helix 18
AB9
A
423 427Right-handed 310
Helix 19
AC1
A
435 447Right-handed alpha
Helix 20
AC2
B
17 35Right-handed alpha
Helix 21
AC3
B
36 39Right-handed 310
Helix 22
AC4
B
44 74Right-handed alpha
Helix 23
AC5
B
98 104Right-handed alpha
Helix 24
AC6
B
115 128Right-handed alpha
Helix 25
AC7
B
138 160Right-handed alpha
Helix 26
AC8
B
189 200Right-handed alpha
Helix 27
AC9
B
214 222Right-handed alpha
Helix 28
AD1
B
224 232Right-handed alpha
Helix 29
AD2
B
236 241Right-handed alpha
Helix 30
AD3
B
271 276Right-handed alpha
Helix 31
AD4
B
277 282Right-handed alpha
Helix 32
AD5
B
284 306Right-handed alpha
Helix 33
AD6
B
342 359Right-handed alpha
Helix 34
AD7
B
360 365Right-handed alpha
Helix 35
AD8
B
383 396Right-handed alpha
Helix 36
AD9
B
402 404Right-handed 310
Helix 37
AE1
B
422 427Right-handed 310
Helix 38
AE2
B
435 448Right-handed alpha
Helix 39
AE3
C
8 12Right-handed 310
Helix 40
AE4
C
17 34Right-handed alpha
Helix 41
AE5
C
44 78Right-handed alpha
Helix 42
AE6
C
98 104Right-handed alpha
Helix 43
AE7
C
115 128Right-handed alpha
Helix 44
AE8
C
138 159Right-handed alpha
Helix 45
AE9
C
189 200Right-handed alpha
Helix 46
AF1
C
214 222Right-handed alpha
Helix 47
AF2
C
222 232Right-handed alpha
Helix 48
AF3
C
236 241Right-handed alpha
Helix 49
AF4
C
271 276Right-handed alpha
Helix 50
AF5
C
277 282Right-handed alpha
Helix 51
AF6
C
284 306Right-handed alpha
Helix 52
AF7
C
342 358Right-handed alpha
Helix 53
AF8
C
360 365Right-handed alpha
Helix 54
AF9
C
383 396Right-handed alpha
Helix 55
AG1
C
402 404Right-handed 310
Helix 56
AG2
C
422 427Right-handed 310
Helix 57
AG3
C
435 447Right-handed alpha
Helix 58
AG4
D
8 12Right-handed 310
Helix 59
AG5
D
17 35Right-handed alpha
Helix 60
AG6
D
36 39Right-handed 310
Helix 61
AG7
D
44 74Right-handed alpha
Helix 62
AG8
D
98 104Right-handed alpha
Helix 63
AG9
D
115 128Right-handed alpha
Helix 64
AH1
D
138 160Right-handed alpha
Helix 65
AH2
D
189 200Right-handed alpha
Helix 66
AH3
D
214 222Right-handed alpha
Helix 67
AH4
D
222 231Right-handed alpha
Helix 68
AH5
D
236 241Right-handed alpha
Helix 69
AH6
D
271 276Right-handed alpha
Helix 70
AH7
D
277 282Right-handed alpha
Helix 71
AH8
D
284 306Right-handed alpha
Helix 72
AH9
D
342 358Right-handed alpha
Helix 73
AI1
D
360 366Right-handed alpha
Helix 74
AI2
D
383 396Right-handed alpha
Helix 75
AI3
D
402 404Right-handed 310
Helix 76
AI4
D
422 427Right-handed 310
Helix 77
AI5
D
435 448Right-handed alpha
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There are 8 sheets in PDB entry 8J6H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 269first strand
Strand 2
A
252 259anti-parallel
Strand 3
A
243 247anti-parallel
Strand 4
A
203 207parallel
Strand 5
A
168 172parallel
Strand 6
A
406 410parallel
Strand 7
A
429 432parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
320 324anti-parallel
Strand 3
A
377 380anti-parallel
Strand 4
A
369 371anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 269first strand
Strand 2
B
252 259anti-parallel
Strand 3
B
243 247anti-parallel
Strand 4
B
203 207parallel
Strand 5
B
168 172parallel
Strand 6
B
406 410parallel
Strand 7
B
429 432parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 316first strand
Strand 2
B
320 324anti-parallel
Strand 3
B
377 381anti-parallel
Strand 4
B
368 371anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
264 269first strand
Strand 2
C
252 259anti-parallel
Strand 3
C
243 247anti-parallel
Strand 4
C
203 207parallel
Strand 5
C
168 172parallel
Strand 6
C
406 410parallel
Strand 7
C
429 432parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
313 316first strand
Strand 2
C
320 324anti-parallel
Strand 3
C
377 381anti-parallel
Strand 4
C
368 371anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
265 269first strand
Strand 2
D
252 258anti-parallel
Strand 3
D
243 247anti-parallel
Strand 4
D
203 208parallel
Strand 5
D
168 172parallel
Strand 6
D
406 410parallel
Strand 7
D
429 432parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
313 316first strand
Strand 2
D
320 324anti-parallel
Strand 3
D
377 381anti-parallel
Strand 4
D
368 371anti-parallel
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