Analysis of interatomic Contacts of Structural Units in PDB entry:
8J6N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J6N entry

There are 12 chains in PDB entry 8J6N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 10	PRO 399
B	GLY 10	PRO 399
C	GLY 10	PRO 399
D	GLY 10	PRO 399
E	GLY 10	PRO 399
H	GLY 10	PRO 399
J	GLY 10	PRO 399
K	GLY 10	PRO 399
F	GLY 10	PRO 399
G	GLY 10	HIS 398
I	GLY 10	PRO 399
L	GLY 10	PRO 399

There are204 helices in PDB entry 8J6N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	25	Right-handed alpha
Helix 2	AA2	A	28	32	Right-handed 310
Helix 3	AA3	A	60	64	Right-handed 310
Helix 4	AA4	A	65	79	Right-handed alpha
Helix 5	AA5	A	89	99	Right-handed alpha
Helix 6	AA6	A	114	124	Right-handed alpha
Helix 7	AA7	A	125	129	Right-handed 310
Helix 8	AA8	A	139	147	Right-handed alpha
Helix 9	AA9	A	168	178	Right-handed alpha
Helix 10	AB1	A	197	202	Right-handed 310
Helix 11	AB2	A	229	244	Right-handed alpha
Helix 12	AB3	A	248	260	Right-handed alpha
Helix 13	AB4	A	261	282	Right-handed alpha
Helix 14	AB5	A	299	307	Right-handed alpha
Helix 15	AB6	A	321	332	Right-handed alpha
Helix 16	AB7	A	360	368	Right-handed alpha
Helix 17	AB8	A	382	398	Right-handed alpha
Helix 18	AB9	B	17	25	Right-handed alpha
Helix 19	AC1	B	28	32	Right-handed 310
Helix 20	AC2	B	60	64	Right-handed 310
Helix 21	AC3	B	65	79	Right-handed alpha
Helix 22	AC4	B	89	99	Right-handed alpha
Helix 23	AC5	B	114	124	Right-handed alpha
Helix 24	AC6	B	125	129	Right-handed 310
Helix 25	AC7	B	139	147	Right-handed alpha
Helix 26	AC8	B	168	178	Right-handed alpha
Helix 27	AC9	B	197	202	Right-handed 310
Helix 28	AD1	B	229	244	Right-handed alpha
Helix 29	AD2	B	248	260	Right-handed alpha
Helix 30	AD3	B	261	282	Right-handed alpha
Helix 31	AD4	B	299	307	Right-handed alpha
Helix 32	AD5	B	321	332	Right-handed alpha
Helix 33	AD6	B	360	368	Right-handed alpha
Helix 34	AD7	B	382	398	Right-handed alpha
Helix 35	AD8	C	17	25	Right-handed alpha
Helix 36	AD9	C	28	32	Right-handed 310
Helix 37	AE1	C	60	64	Right-handed 310
Helix 38	AE2	C	65	79	Right-handed alpha
Helix 39	AE3	C	89	99	Right-handed alpha
Helix 40	AE4	C	114	124	Right-handed alpha
Helix 41	AE5	C	125	129	Right-handed 310
Helix 42	AE6	C	139	147	Right-handed alpha
Helix 43	AE7	C	168	178	Right-handed alpha
Helix 44	AE8	C	197	202	Right-handed 310
Helix 45	AE9	C	229	244	Right-handed alpha
Helix 46	AF1	C	248	260	Right-handed alpha
Helix 47	AF2	C	261	282	Right-handed alpha
Helix 48	AF3	C	299	307	Right-handed alpha
Helix 49	AF4	C	321	332	Right-handed alpha
Helix 50	AF5	C	360	368	Right-handed alpha
Helix 51	AF6	C	382	398	Right-handed alpha
Helix 52	AF7	D	17	25	Right-handed alpha
Helix 53	AF8	D	28	32	Right-handed 310
Helix 54	AF9	D	60	64	Right-handed 310
Helix 55	AG1	D	65	79	Right-handed alpha
Helix 56	AG2	D	89	99	Right-handed alpha
Helix 57	AG3	D	114	124	Right-handed alpha
Helix 58	AG4	D	125	129	Right-handed 310
Helix 59	AG5	D	139	147	Right-handed alpha
Helix 60	AG6	D	168	178	Right-handed alpha
Helix 61	AG7	D	197	202	Right-handed 310
Helix 62	AG8	D	229	244	Right-handed alpha
Helix 63	AG9	D	248	260	Right-handed alpha
Helix 64	AH1	D	261	282	Right-handed alpha
Helix 65	AH2	D	299	307	Right-handed alpha
Helix 66	AH3	D	321	332	Right-handed alpha
Helix 67	AH4	D	360	368	Right-handed alpha
Helix 68	AH5	D	382	398	Right-handed alpha
Helix 69	AH6	E	17	25	Right-handed alpha
Helix 70	AH7	E	28	32	Right-handed 310
Helix 71	AH8	E	60	64	Right-handed 310
Helix 72	AH9	E	65	79	Right-handed alpha
Helix 73	AI1	E	89	99	Right-handed alpha
Helix 74	AI2	E	114	124	Right-handed alpha
Helix 75	AI3	E	125	129	Right-handed 310
Helix 76	AI4	E	139	147	Right-handed alpha
Helix 77	AI5	E	168	178	Right-handed alpha
Helix 78	AI6	E	197	202	Right-handed 310
Helix 79	AI7	E	229	244	Right-handed alpha
Helix 80	AI8	E	248	260	Right-handed alpha
Helix 81	AI9	E	261	282	Right-handed alpha
Helix 82	AJ1	E	299	307	Right-handed alpha
Helix 83	AJ2	E	321	332	Right-handed alpha
Helix 84	AJ3	E	360	368	Right-handed alpha
Helix 85	AJ4	E	382	398	Right-handed alpha
Helix 86	AJ5	H	17	25	Right-handed alpha
Helix 87	AJ6	H	28	32	Right-handed 310
Helix 88	AJ7	H	60	64	Right-handed 310
Helix 89	AJ8	H	65	79	Right-handed alpha
Helix 90	AJ9	H	89	99	Right-handed alpha
Helix 91	AK1	H	114	124	Right-handed alpha
Helix 92	AK2	H	125	129	Right-handed 310
Helix 93	AK3	H	139	147	Right-handed alpha
Helix 94	AK4	H	168	178	Right-handed alpha
Helix 95	AK5	H	197	202	Right-handed 310
Helix 96	AK6	H	229	244	Right-handed alpha
Helix 97	AK7	H	248	260	Right-handed alpha
Helix 98	AK8	H	261	282	Right-handed alpha
Helix 99	AK9	H	299	307	Right-handed alpha
Helix 100	AL1	H	321	332	Right-handed alpha
Helix 101	AL2	H	360	368	Right-handed alpha
Helix 102	AL3	H	382	398	Right-handed alpha
Helix 103	AL4	J	17	25	Right-handed alpha
Helix 104	AL5	J	28	32	Right-handed 310
Helix 105	AL6	J	60	64	Right-handed 310
Helix 106	AL7	J	65	79	Right-handed alpha
Helix 107	AL8	J	89	99	Right-handed alpha
Helix 108	AL9	J	114	124	Right-handed alpha
Helix 109	AM1	J	125	129	Right-handed 310
Helix 110	AM2	J	139	147	Right-handed alpha
Helix 111	AM3	J	168	178	Right-handed alpha
Helix 112	AM4	J	197	202	Right-handed 310
Helix 113	AM5	J	229	244	Right-handed alpha
Helix 114	AM6	J	248	260	Right-handed alpha
Helix 115	AM7	J	261	282	Right-handed alpha
Helix 116	AM8	J	299	307	Right-handed alpha
Helix 117	AM9	J	321	332	Right-handed alpha
Helix 118	AN1	J	360	368	Right-handed alpha
Helix 119	AN2	J	382	398	Right-handed alpha
Helix 120	AN3	K	17	25	Right-handed alpha
Helix 121	AN4	K	28	32	Right-handed 310
Helix 122	AN5	K	60	64	Right-handed 310
Helix 123	AN6	K	65	79	Right-handed alpha
Helix 124	AN7	K	89	99	Right-handed alpha
Helix 125	AN8	K	114	124	Right-handed alpha
Helix 126	AN9	K	125	129	Right-handed 310
Helix 127	AO1	K	139	147	Right-handed alpha
Helix 128	AO2	K	168	178	Right-handed alpha
Helix 129	AO3	K	197	202	Right-handed 310
Helix 130	AO4	K	229	244	Right-handed alpha
Helix 131	AO5	K	248	260	Right-handed alpha
Helix 132	AO6	K	261	282	Right-handed alpha
Helix 133	AO7	K	299	307	Right-handed alpha
Helix 134	AO8	K	321	332	Right-handed alpha
Helix 135	AO9	K	360	368	Right-handed alpha
Helix 136	AP1	K	382	398	Right-handed alpha
Helix 137	AP2	F	17	25	Right-handed alpha
Helix 138	AP3	F	28	32	Right-handed 310
Helix 139	AP4	F	60	64	Right-handed 310
Helix 140	AP5	F	65	79	Right-handed alpha
Helix 141	AP6	F	89	99	Right-handed alpha
Helix 142	AP7	F	114	124	Right-handed alpha
Helix 143	AP8	F	125	129	Right-handed 310
Helix 144	AP9	F	139	147	Right-handed alpha
Helix 145	AQ1	F	168	178	Right-handed alpha
Helix 146	AQ2	F	197	202	Right-handed 310
Helix 147	AQ3	F	229	244	Right-handed alpha
Helix 148	AQ4	F	248	260	Right-handed alpha
Helix 149	AQ5	F	261	282	Right-handed alpha
Helix 150	AQ6	F	299	307	Right-handed alpha
Helix 151	AQ7	F	321	332	Right-handed alpha
Helix 152	AQ8	F	360	368	Right-handed alpha
Helix 153	AQ9	F	382	398	Right-handed alpha
Helix 154	AR1	G	17	25	Right-handed alpha
Helix 155	AR2	G	28	32	Right-handed 310
Helix 156	AR3	G	60	64	Right-handed 310
Helix 157	AR4	G	65	79	Right-handed alpha
Helix 158	AR5	G	89	99	Right-handed alpha
Helix 159	AR6	G	114	124	Right-handed alpha
Helix 160	AR7	G	125	129	Right-handed 310
Helix 161	AR8	G	139	147	Right-handed alpha
Helix 162	AR9	G	168	178	Right-handed alpha
Helix 163	AS1	G	197	202	Right-handed 310
Helix 164	AS2	G	229	244	Right-handed alpha
Helix 165	AS3	G	248	260	Right-handed alpha
Helix 166	AS4	G	261	282	Right-handed alpha
Helix 167	AS5	G	299	307	Right-handed alpha
Helix 168	AS6	G	321	332	Right-handed alpha
Helix 169	AS7	G	360	368	Right-handed alpha
Helix 170	AS8	G	382	398	Right-handed alpha
Helix 171	AS9	I	17	25	Right-handed alpha
Helix 172	AT1	I	28	32	Right-handed 310
Helix 173	AT2	I	60	64	Right-handed 310
Helix 174	AT3	I	65	79	Right-handed alpha
Helix 175	AT4	I	89	99	Right-handed alpha
Helix 176	AT5	I	114	124	Right-handed alpha
Helix 177	AT6	I	125	129	Right-handed 310
Helix 178	AT7	I	139	147	Right-handed alpha
Helix 179	AT8	I	168	178	Right-handed alpha
Helix 180	AT9	I	197	202	Right-handed 310
Helix 181	AU1	I	229	244	Right-handed alpha
Helix 182	AU2	I	248	260	Right-handed alpha
Helix 183	AU3	I	261	282	Right-handed alpha
Helix 184	AU4	I	299	307	Right-handed alpha
Helix 185	AU5	I	321	332	Right-handed alpha
Helix 186	AU6	I	360	368	Right-handed alpha
Helix 187	AU7	I	382	398	Right-handed alpha
Helix 188	AU8	L	17	25	Right-handed alpha
Helix 189	AU9	L	28	32	Right-handed 310
Helix 190	AV1	L	60	64	Right-handed 310
Helix 191	AV2	L	65	79	Right-handed alpha
Helix 192	AV3	L	89	99	Right-handed alpha
Helix 193	AV4	L	114	124	Right-handed alpha
Helix 194	AV5	L	125	129	Right-handed 310
Helix 195	AV6	L	139	147	Right-handed alpha
Helix 196	AV7	L	168	178	Right-handed alpha
Helix 197	AV8	L	197	202	Right-handed 310
Helix 198	AV9	L	229	244	Right-handed alpha
Helix 199	AW1	L	248	260	Right-handed alpha
Helix 200	AW2	L	261	282	Right-handed alpha
Helix 201	AW3	L	299	307	Right-handed alpha
Helix 202	AW4	L	321	332	Right-handed alpha
Helix 203	AW5	L	360	368	Right-handed alpha
Helix 204	AW6	L	382	398	Right-handed alpha

There are 24 sheets in PDB entry 8J6N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	87	first strand
Strand 2	A	223	227	anti-parallel
Strand 3	A	205	209	anti-parallel
Strand 4	A	183	187	parallel
Strand 5	A	151	157	parallel
Strand 6	A	106	110	parallel
Strand 7	A	131	135	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	290	first strand
Strand 2	A	313	318	anti-parallel
Strand 3	A	373	377	anti-parallel
Strand 4	A	347	349	anti-parallel
Strand 5	A	336	337	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	87	first strand
Strand 2	B	223	227	anti-parallel
Strand 3	B	205	209	anti-parallel
Strand 4	B	183	187	parallel
Strand 5	B	151	157	parallel
Strand 6	B	106	110	parallel
Strand 7	B	131	135	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	290	first strand
Strand 2	B	313	318	anti-parallel
Strand 3	B	373	377	anti-parallel
Strand 4	B	347	349	anti-parallel
Strand 5	B	336	337	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	87	first strand
Strand 2	C	223	227	anti-parallel
Strand 3	C	205	209	anti-parallel
Strand 4	C	183	187	parallel
Strand 5	C	151	157	parallel
Strand 6	C	106	110	parallel
Strand 7	C	131	135	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	290	first strand
Strand 2	C	313	318	anti-parallel
Strand 3	C	373	377	anti-parallel
Strand 4	C	347	349	anti-parallel
Strand 5	C	336	337	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	87	first strand
Strand 2	D	223	227	anti-parallel
Strand 3	D	205	209	anti-parallel
Strand 4	D	183	187	parallel
Strand 5	D	151	157	parallel
Strand 6	D	106	110	parallel
Strand 7	D	131	135	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	290	first strand
Strand 2	D	313	318	anti-parallel
Strand 3	D	373	377	anti-parallel
Strand 4	D	347	349	anti-parallel
Strand 5	D	336	337	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	87	first strand
Strand 2	E	223	227	anti-parallel
Strand 3	E	205	209	anti-parallel
Strand 4	E	183	187	parallel
Strand 5	E	151	157	parallel
Strand 6	E	106	110	parallel
Strand 7	E	131	135	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	286	290	first strand
Strand 2	E	313	318	anti-parallel
Strand 3	E	373	377	anti-parallel
Strand 4	E	347	349	anti-parallel
Strand 5	E	336	337	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	83	87	first strand
Strand 2	H	223	227	anti-parallel
Strand 3	H	205	209	anti-parallel
Strand 4	H	183	187	parallel
Strand 5	H	151	157	parallel
Strand 6	H	106	110	parallel
Strand 7	H	131	135	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	286	290	first strand
Strand 2	H	313	318	anti-parallel
Strand 3	H	373	377	anti-parallel
Strand 4	H	347	349	anti-parallel
Strand 5	H	336	337	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	83	87	first strand
Strand 2	J	223	227	anti-parallel
Strand 3	J	205	209	anti-parallel
Strand 4	J	183	187	parallel
Strand 5	J	151	157	parallel
Strand 6	J	106	110	parallel
Strand 7	J	131	135	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	286	290	first strand
Strand 2	J	313	318	anti-parallel
Strand 3	J	373	377	anti-parallel
Strand 4	J	347	349	anti-parallel
Strand 5	J	336	337	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	83	87	first strand
Strand 2	K	223	227	anti-parallel
Strand 3	K	205	209	anti-parallel
Strand 4	K	183	187	parallel
Strand 5	K	151	157	parallel
Strand 6	K	106	110	parallel
Strand 7	K	131	135	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	286	290	first strand
Strand 2	K	313	318	anti-parallel
Strand 3	K	373	377	anti-parallel
Strand 4	K	347	349	anti-parallel
Strand 5	K	336	337	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	87	first strand
Strand 2	F	223	227	anti-parallel
Strand 3	F	205	209	anti-parallel
Strand 4	F	183	187	parallel
Strand 5	F	151	157	parallel
Strand 6	F	106	110	parallel
Strand 7	F	131	135	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	286	290	first strand
Strand 2	F	313	318	anti-parallel
Strand 3	F	373	377	anti-parallel
Strand 4	F	347	349	anti-parallel
Strand 5	F	336	337	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	87	first strand
Strand 2	G	223	227	anti-parallel
Strand 3	G	205	209	anti-parallel
Strand 4	G	183	187	parallel
Strand 5	G	151	157	parallel
Strand 6	G	106	110	parallel
Strand 7	G	131	135	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	286	290	first strand
Strand 2	G	313	318	anti-parallel
Strand 3	G	373	377	anti-parallel
Strand 4	G	347	349	anti-parallel
Strand 5	G	336	337	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	83	87	first strand
Strand 2	I	223	227	anti-parallel
Strand 3	I	205	209	anti-parallel
Strand 4	I	183	187	parallel
Strand 5	I	151	157	parallel
Strand 6	I	106	110	parallel
Strand 7	I	131	135	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	286	290	first strand
Strand 2	I	313	318	anti-parallel
Strand 3	I	373	377	anti-parallel
Strand 4	I	347	349	anti-parallel
Strand 5	I	336	337	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	83	87	first strand
Strand 2	L	223	227	anti-parallel
Strand 3	L	205	209	anti-parallel
Strand 4	L	183	187	parallel
Strand 5	L	151	157	parallel
Strand 6	L	106	110	parallel
Strand 7	L	131	135	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	286	290	first strand
Strand 2	L	313	318	anti-parallel
Strand 3	L	373	377	anti-parallel
Strand 4	L	347	349	anti-parallel
Strand 5	L	336	337	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J6N

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J6N