Analysis of interatomic Contacts of Structural Units in PDB entry:
8J6O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J6O entry

There are 2 chains in PDB entry 8J6O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 25	PHE 832
B	PRO 25	PHE 832

There are 36 helices in PDB entry 8J6O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	289	322	Right-handed alpha
Helix 2	AA2	A	456	479	Right-handed alpha
Helix 3	AA3	A	499	506	Right-handed alpha
Helix 4	AA4	A	506	533	Right-handed alpha
Helix 5	AA5	A	535	541	Right-handed alpha
Helix 6	AA6	A	547	569	Right-handed alpha
Helix 7	AA7	A	572	574	Right-handed 310
Helix 8	AA8	A	575	599	Right-handed alpha
Helix 9	AA9	A	601	606	Right-handed 310
Helix 10	AB1	A	608	627	Right-handed alpha
Helix 11	AB2	A	632	655	Right-handed alpha
Helix 12	AB3	A	685	707	Right-handed alpha
Helix 13	AB4	A	713	740	Right-handed alpha
Helix 14	AB5	A	745	769	Right-handed alpha
Helix 15	AB6	A	776	781	Right-handed alpha
Helix 16	AB7	A	782	784	Right-handed 310
Helix 17	AB8	A	794	817	Right-handed alpha
Helix 18	AB9	A	818	823	Right-handed alpha
Helix 19	AC1	B	289	322	Right-handed alpha
Helix 20	AC2	B	456	479	Right-handed alpha
Helix 21	AC3	B	499	506	Right-handed alpha
Helix 22	AC4	B	506	533	Right-handed alpha
Helix 23	AC5	B	535	541	Right-handed alpha
Helix 24	AC6	B	547	569	Right-handed alpha
Helix 25	AC7	B	572	574	Right-handed 310
Helix 26	AC8	B	575	599	Right-handed alpha
Helix 27	AC9	B	601	606	Right-handed 310
Helix 28	AD1	B	608	627	Right-handed alpha
Helix 29	AD2	B	632	655	Right-handed alpha
Helix 30	AD3	B	685	707	Right-handed alpha
Helix 31	AD4	B	713	740	Right-handed alpha
Helix 32	AD5	B	745	769	Right-handed alpha
Helix 33	AD6	B	776	781	Right-handed alpha
Helix 34	AD7	B	782	784	Right-handed 310
Helix 35	AD8	B	794	817	Right-handed alpha
Helix 36	AD9	B	818	823	Right-handed alpha

There are 10 sheets in PDB entry 8J6O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	32	first strand
Strand 2	A	47	58	parallel
Strand 3	A	125	135	anti-parallel
Strand 4	A	80	85	anti-parallel
Strand 5	A	90	95	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	142	150	anti-parallel
Strand 3	A	65	71	anti-parallel
Strand 4	A	111	115	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	100	first strand
Strand 2	A	106	109	anti-parallel
Strand 3	A	271	272	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	156	first strand
Strand 2	A	172	177	parallel
Strand 3	A	242	249	anti-parallel
Strand 4	A	198	204	anti-parallel
Strand 5	A	221	225	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	166	first strand
Strand 2	A	278	286	anti-parallel
Strand 3	A	184	191	anti-parallel
Strand 4	A	228	234	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	32	first strand
Strand 2	B	47	58	parallel
Strand 3	B	125	135	anti-parallel
Strand 4	B	80	85	anti-parallel
Strand 5	B	90	95	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	142	150	anti-parallel
Strand 3	B	65	71	anti-parallel
Strand 4	B	111	115	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	106	109	anti-parallel
Strand 3	B	271	272	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	172	177	parallel
Strand 3	B	242	249	anti-parallel
Strand 4	B	198	204	anti-parallel
Strand 5	B	221	225	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	278	286	anti-parallel
Strand 3	B	184	191	anti-parallel
Strand 4	B	228	234	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J6O

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J6O