Analysis of interatomic Contacts of Structural Units in PDB entry:
8J6S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J6S entry

There are 12 chains in PDB entry 8J6S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	GLU 59	GLU 133
H	ASN 25	ARG 95
E	THR 45	ARG 134
F	ASP 24	LEU 97
I	C 23	G 121
C	ALA 47	ARG 134
D	ASN 25	LEU 97
A	GLU 59	ARG 134
B	ILE 26	GLY 94
J	T 28	G 125
L	MET 1	LEU 380
K	PRO 683	VAL 689

There are 30 helices in PDB entry 8J6S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	63	79	Right-handed alpha
Helix 2	AA2	G	85	114	Right-handed alpha
Helix 3	AA3	G	120	132	Right-handed alpha
Helix 4	AA4	H	25	29	Right-handed 310
Helix 5	AA5	H	30	42	Right-handed alpha
Helix 6	AA6	H	49	76	Right-handed alpha
Helix 7	AA7	H	82	94	Right-handed alpha
Helix 8	AA8	E	46	57	Right-handed alpha
Helix 9	AA9	E	63	79	Right-handed alpha
Helix 10	AB1	E	85	114	Right-handed alpha
Helix 11	AB2	E	120	131	Right-handed alpha
Helix 12	AB3	F	24	29	Right-handed 310
Helix 13	AB4	F	30	41	Right-handed alpha
Helix 14	AB5	F	49	76	Right-handed alpha
Helix 15	AB6	F	82	94	Right-handed alpha
Helix 16	AB7	C	48	57	Right-handed alpha
Helix 17	AB8	C	63	79	Right-handed alpha
Helix 18	AB9	C	85	114	Right-handed alpha
Helix 19	AC1	C	120	131	Right-handed alpha
Helix 20	AC2	D	25	29	Right-handed 310
Helix 21	AC3	D	30	42	Right-handed alpha
Helix 22	AC4	D	49	76	Right-handed alpha
Helix 23	AC5	D	82	94	Right-handed alpha
Helix 24	AC6	A	63	79	Right-handed alpha
Helix 25	AC7	A	85	114	Right-handed alpha
Helix 26	AC8	A	120	131	Right-handed alpha
Helix 27	AC9	B	30	42	Right-handed alpha
Helix 28	AD1	B	49	77	Right-handed alpha
Helix 29	AD2	B	82	94	Right-handed alpha
Helix 30	AD3	K	704	708	Right-handed 310

There are 10 sheets in PDB entry 8J6S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	D	80	81	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	D	45	46	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2	6	first strand
Strand 2	L	370	374	anti-parallel
Strand 3	L	360	361	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	21	first strand
Strand 2	L	30	35	anti-parallel
Strand 3	L	41	46	anti-parallel
Strand 4	L	57	62	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	69	74	first strand
Strand 2	L	81	85	anti-parallel
Strand 3	L	90	94	anti-parallel
Strand 4	L	120	124	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	132	137	first strand
Strand 2	L	143	148	anti-parallel
Strand 3	L	153	157	anti-parallel
Strand 4	L	162	167	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	174	179	first strand
Strand 2	L	185	190	anti-parallel
Strand 3	L	195	199	anti-parallel
Strand 4	L	205	209	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	241	242	first strand
Strand 2	L	248	251	anti-parallel
Strand 3	L	265	270	anti-parallel
Strand 4	L	279	282	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	290	293	first strand
Strand 2	L	318	322	anti-parallel
Strand 3	L	326	331	anti-parallel
Strand 4	L	339	342	anti-parallel
Strand 5	K	684	685	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J6S

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J6S