Analysis of interatomic Contacts of Structural Units in PDB entry:
8J6Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J6Z entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 21 chains in PDB entry 8J6Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	HIS 47	PRO 239
2	PRO 50	ILE 250
3	ARG 53	LEU 270
4	LYS 54	THR 249
A	LEU 13	VAL 749
B	LEU 3	GLY 734
C	SER 2	TYR 81
D	GLY 62	LEU 204
E	PRO 78	VAL 141
F	ASP 68	LYS 219
G	LEU 62	ASN 152
H	SER 56	LEU 145
I	ASN 5	LYS 35
J	MET 1	PHE 41
K	ASP 47	ILE 130
L	THR 58	PHE 217
O	GLU 53	ASP 138
x	SER 13	GLY 231
y	SER 13	GLY 231
z	ARG 1	ARG 2
z	VAL 4	GLY 227

There are186 helices in PDB entry 8J6Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	76	107	Right-handed alpha
Helix 2	AA2	1	113	121	Right-handed 310
Helix 3	AA3	1	137	158	Right-handed alpha
Helix 4	AA4	1	162	166	Right-handed 310
Helix 5	AA5	1	169	173	Right-handed 310
Helix 6	AA6	1	176	179	Right-handed 310
Helix 7	AA7	1	180	212	Right-handed alpha
Helix 8	AA8	1	216	227	Right-handed alpha
Helix 9	AA9	1	233	238	Right-handed alpha
Helix 10	AB1	2	83	117	Right-handed alpha
Helix 11	AB2	2	136	161	Right-handed alpha
Helix 12	AB3	2	185	190	Right-handed alpha
Helix 13	AB4	2	198	231	Right-handed alpha
Helix 14	AB5	2	233	244	Right-handed alpha
Helix 15	AB6	3	61	65	Right-handed 310
Helix 16	AB7	3	92	114	Right-handed alpha
Helix 17	AB8	3	115	123	Right-handed alpha
Helix 18	AB9	3	133	137	Right-handed 310
Helix 19	AC1	3	140	144	Right-handed 310
Helix 20	AC2	3	151	176	Right-handed alpha
Helix 21	AC3	3	178	182	Right-handed 310
Helix 22	AC4	3	202	207	Right-handed alpha
Helix 23	AC5	3	214	247	Right-handed alpha
Helix 24	AC6	3	249	260	Right-handed alpha
Helix 25	AC7	3	265	270	Right-handed alpha
Helix 26	AC8	4	81	84	Right-handed 310
Helix 27	AC9	4	85	120	Right-handed alpha
Helix 28	AD1	4	138	163	Right-handed alpha
Helix 29	AD2	4	187	191	Right-handed 310
Helix 30	AD3	4	198	227	Right-handed alpha
Helix 31	AD4	4	229	240	Right-handed alpha
Helix 32	AD5	A	23	28	Right-handed 310
Helix 33	AD6	A	43	52	Right-handed alpha
Helix 34	AD7	A	55	60	Right-handed alpha
Helix 35	AD8	A	62	95	Right-handed alpha
Helix 36	AD9	A	97	102	Right-handed alpha
Helix 37	AE1	A	120	125	Right-handed 310
Helix 38	AE2	A	140	148	Right-handed alpha
Helix 39	AE3	A	152	180	Right-handed alpha
Helix 40	AE4	A	184	189	Right-handed alpha
Helix 41	AE5	A	190	201	Right-handed alpha
Helix 42	AE6	A	203	217	Right-handed alpha
Helix 43	AE7	A	217	228	Right-handed alpha
Helix 44	AE8	A	230	234	Right-handed 310
Helix 45	AE9	A	238	243	Right-handed alpha
Helix 46	AF1	A	243	251	Right-handed alpha
Helix 47	AF2	A	252	257	Right-handed 310
Helix 48	AF3	A	258	263	Right-handed alpha
Helix 49	AF4	A	265	272	Right-handed 310
Helix 50	AF5	A	287	306	Right-handed alpha
Helix 51	AF6	A	318	325	Right-handed alpha
Helix 52	AF7	A	337	342	Right-handed alpha
Helix 53	AF8	A	345	371	Right-handed alpha
Helix 54	AF9	A	380	413	Right-handed alpha
Helix 55	AG1	A	421	429	Right-handed alpha
Helix 56	AG2	A	430	463	Right-handed alpha
Helix 57	AG3	A	464	468	Right-handed 310
Helix 58	AG4	A	478	490	Right-handed alpha
Helix 59	AG5	A	504	508	Right-handed 310
Helix 60	AG6	A	527	554	Right-handed alpha
Helix 61	AG7	A	563	568	Right-handed 310
Helix 62	AG8	A	585	616	Right-handed alpha
Helix 63	AG9	A	633	638	Right-handed alpha
Helix 64	AH1	A	640	648	Right-handed alpha
Helix 65	AH2	A	648	653	Right-handed alpha
Helix 66	AH3	A	653	658	Right-handed alpha
Helix 67	AH4	A	664	681	Right-handed alpha
Helix 68	AH5	A	681	687	Right-handed alpha
Helix 69	AH6	A	688	706	Right-handed alpha
Helix 70	AH7	A	718	749	Right-handed alpha
Helix 71	AH8	B	9	14	Right-handed alpha
Helix 72	AH9	B	18	27	Right-handed alpha
Helix 73	AI1	B	30	34	Right-handed 310
Helix 74	AI2	B	38	72	Right-handed alpha
Helix 75	AI3	B	73	80	Right-handed alpha
Helix 76	AI4	B	81	84	Right-handed 310
Helix 77	AI5	B	97	104	Right-handed alpha
Helix 78	AI6	B	119	127	Right-handed alpha
Helix 79	AI7	B	131	156	Right-handed alpha
Helix 80	AI8	B	157	162	Right-handed 310
Helix 81	AI9	B	164	169	Right-handed alpha
Helix 82	AJ1	B	170	182	Right-handed alpha
Helix 83	AJ2	B	183	197	Right-handed alpha
Helix 84	AJ3	B	197	203	Right-handed alpha
Helix 85	AJ4	B	222	228	Right-handed alpha
Helix 86	AJ5	B	229	234	Right-handed 310
Helix 87	AJ6	B	269	288	Right-handed alpha
Helix 88	AJ7	B	300	307	Right-handed alpha
Helix 89	AJ8	B	321	328	Right-handed alpha
Helix 90	AJ9	B	329	355	Right-handed alpha
Helix 91	AK1	B	364	397	Right-handed alpha
Helix 92	AK2	B	406	414	Right-handed alpha
Helix 93	AK3	B	414	446	Right-handed alpha
Helix 94	AK4	B	448	452	Right-handed 310
Helix 95	AK5	B	457	467	Right-handed alpha
Helix 96	AK6	B	476	480	Right-handed 310
Helix 97	AK7	B	483	490	Right-handed alpha
Helix 98	AK8	B	493	502	Right-handed alpha
Helix 99	AK9	B	513	540	Right-handed alpha
Helix 100	AL1	B	549	554	Right-handed 310
Helix 101	AL2	B	562	566	Right-handed 310
Helix 102	AL3	B	571	604	Right-handed alpha
Helix 103	AL4	B	606	613	Right-handed alpha
Helix 104	AL5	B	615	623	Right-handed alpha
Helix 105	AL6	B	623	628	Right-handed alpha
Helix 106	AL7	B	630	633	Right-handed 310
Helix 107	AL8	B	643	666	Right-handed alpha
Helix 108	AL9	B	667	684	Right-handed alpha
Helix 109	AM1	B	701	734	Right-handed alpha
Helix 110	AM2	C	15	21	Right-handed alpha
Helix 111	AM3	C	44	48	Right-handed 310
Helix 112	AM4	C	52	58	Right-handed alpha
Helix 113	AM5	D	85	91	Right-handed alpha
Helix 114	AM6	D	127	142	Right-handed alpha
Helix 115	AM7	D	184	188	Right-handed 310
Helix 116	AM8	D	190	195	Right-handed 310
Helix 117	AM9	F	68	72	Right-handed 310
Helix 118	AN1	F	78	97	Right-handed alpha
Helix 119	AN2	F	103	126	Right-handed alpha
Helix 120	AN3	F	143	145	Right-handed 310
Helix 121	AN4	F	146	175	Right-handed alpha
Helix 122	AN5	F	182	187	Right-handed alpha
Helix 123	AN6	F	189	198	Right-handed alpha
Helix 124	AN7	F	199	201	Right-handed 310
Helix 125	AN8	F	202	213	Right-handed alpha
Helix 126	AN9	G	64	69	Right-handed alpha
Helix 127	AO1	G	70	82	Right-handed alpha
Helix 128	AO2	G	83	94	Right-handed alpha
Helix 129	AO3	G	109	113	Right-handed 310
Helix 130	AO4	G	115	119	Right-handed 310
Helix 131	AO5	G	128	150	Right-handed alpha
Helix 132	AO6	H	63	68	Right-handed alpha
Helix 133	AO7	H	83	94	Right-handed alpha
Helix 134	AO8	H	95	98	Right-handed 310
Helix 135	AO9	H	99	121	Right-handed alpha
Helix 136	AP1	H	127	132	Right-handed alpha
Helix 137	AP2	H	140	144	Right-handed 310
Helix 138	AP3	I	7	17	Right-handed alpha
Helix 139	AP4	I	17	32	Right-handed alpha
Helix 140	AP5	J	2	9	Right-handed alpha
Helix 141	AP6	J	10	33	Right-handed alpha
Helix 142	AP7	K	51	70	Right-handed alpha
Helix 143	AP8	K	102	127	Right-handed alpha
Helix 144	AP9	L	66	68	Right-handed 310
Helix 145	AQ1	L	76	81	Right-handed alpha
Helix 146	AQ2	L	81	90	Right-handed alpha
Helix 147	AQ3	L	91	95	Right-handed 310
Helix 148	AQ4	L	99	123	Right-handed alpha
Helix 149	AQ5	L	130	158	Right-handed alpha
Helix 150	AQ6	L	179	182	Right-handed 310
Helix 151	AQ7	L	183	211	Right-handed alpha
Helix 152	AQ8	O	61	73	Right-handed alpha
Helix 153	AQ9	O	74	77	Right-handed 310
Helix 154	AR1	O	84	97	Right-handed alpha
Helix 155	AR2	O	109	135	Right-handed alpha
Helix 156	AR3	x	24	28	Right-handed 310
Helix 157	AR4	x	53	78	Right-handed alpha
Helix 158	AR5	x	79	88	Right-handed alpha
Helix 159	AR6	x	98	105	Right-handed 310
Helix 160	AR7	x	110	114	Right-handed 310
Helix 161	AR8	x	122	144	Right-handed alpha
Helix 162	AR9	x	158	162	Right-handed 310
Helix 163	AS1	x	169	175	Right-handed alpha
Helix 164	AS2	x	175	202	Right-handed alpha
Helix 165	AS3	x	206	215	Right-handed alpha
Helix 166	AS4	x	220	225	Right-handed 310
Helix 167	AS5	y	24	28	Right-handed 310
Helix 168	AS6	y	53	78	Right-handed alpha
Helix 169	AS7	y	79	88	Right-handed alpha
Helix 170	AS8	y	95	99	Right-handed 310
Helix 171	AS9	y	100	105	Right-handed 310
Helix 172	AT1	y	110	114	Right-handed 310
Helix 173	AT2	y	122	144	Right-handed alpha
Helix 174	AT3	y	158	162	Right-handed 310
Helix 175	AT4	y	169	198	Right-handed alpha
Helix 176	AT5	y	204	214	Right-handed alpha
Helix 177	AT6	y	220	225	Right-handed 310
Helix 178	AT7	z	21	25	Right-handed 310
Helix 179	AT8	z	50	84	Right-handed alpha
Helix 180	AT9	z	92	102	Right-handed 310
Helix 181	AU1	z	119	134	Right-handed alpha
Helix 182	AU2	z	136	141	Right-handed alpha
Helix 183	AU3	z	154	158	Right-handed 310
Helix 184	AU4	z	165	196	Right-handed alpha
Helix 185	AU5	z	200	211	Right-handed alpha
Helix 186	AU6	z	216	221	Right-handed 310

There are 17 sheets in PDB entry 8J6Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	127	128	first strand
Strand 2	1	131	132	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	181	183	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	135	136	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	515	first strand
Strand 2	A	518	521	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	620	first strand
Strand 2	A	626	628	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	636	first strand
Strand 2	B	639	640	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	180	181	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	125	first strand
Strand 2	D	93	100	anti-parallel
Strand 3	D	146	151	anti-parallel
Strand 4	D	157	161	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	107	first strand
Strand 2	D	113	116	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	133	first strand
Strand 2	E	116	119	anti-parallel
Strand 3	E	100	106	anti-parallel
Strand 4	E	86	89	anti-parallel
Strand 5	E	138	140	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	74	first strand
Strand 2	F	129	130	anti-parallel
Strand 3	F	136	137	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	98	99	first strand
Strand 2	G	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	78	80	first strand
Strand 2	K	86	88	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	63	64	first strand
Strand 2	L	74	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	145	146	first strand
Strand 2	x	149	150	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J6Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J6Z