Analysis of interatomic Contacts of Structural Units in PDB entry:
8J72

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J72 entry

There are 3 chains in PDB entry 8J72 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 581	PHE 855
B	PRO 579	PHE 855
C	G 2	C 10

There are 3 helices in PDB entry 8J72. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	801	803	Right-handed 310
Helix 2	AA2	B	728	733	Right-handed 310
Helix 3	AA3	B	801	803	Right-handed 310

There are 19 sheets in PDB entry 8J72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	601	first strand
Strand 2	A	607	611	anti-parallel
Strand 3	A	616	620	anti-parallel
Strand 4	A	626	630	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	632	633	first strand
Strand 2	A	639	640	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	654	658	anti-parallel
Strand 3	A	663	667	anti-parallel
Strand 4	A	673	677	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	690	695	first strand
Strand 2	A	701	705	anti-parallel
Strand 3	A	710	714	anti-parallel
Strand 4	A	720	725	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	737	742	first strand
Strand 2	A	748	752	anti-parallel
Strand 3	A	757	761	anti-parallel
Strand 4	A	768	771	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	773	774	first strand
Strand 2	A	780	781	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	789	first strand
Strand 2	A	795	799	anti-parallel
Strand 3	A	805	808	anti-parallel
Strand 4	A	814	818	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	820	821	first strand
Strand 2	A	827	828	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	831	836	first strand
Strand 2	A	842	846	anti-parallel
Strand 3	A	851	854	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	581	583	first strand
Strand 2	B	851	854	anti-parallel
Strand 3	B	842	846	anti-parallel
Strand 4	B	831	836	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	586	first strand
Strand 2	B	592	593	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	599	601	first strand
Strand 2	B	607	611	anti-parallel
Strand 3	B	616	620	anti-parallel
Strand 4	B	626	630	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	633	first strand
Strand 2	B	639	640	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	643	648	first strand
Strand 2	B	654	658	anti-parallel
Strand 3	B	663	667	anti-parallel
Strand 4	B	673	677	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	690	695	first strand
Strand 2	B	701	705	anti-parallel
Strand 3	B	710	714	anti-parallel
Strand 4	B	720	724	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	737	742	first strand
Strand 2	B	748	752	anti-parallel
Strand 3	B	757	761	anti-parallel
Strand 4	B	768	771	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	773	774	first strand
Strand 2	B	780	781	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	784	789	first strand
Strand 2	B	795	799	anti-parallel
Strand 3	B	805	808	anti-parallel
Strand 4	B	814	818	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	820	821	first strand
Strand 2	B	827	828	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J72

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J72