Analysis of interatomic Contacts of Structural Units in PDB entry:
8J79

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J79 entry

There are 2 chains in PDB entry 8J79 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	VAL 1332
B	ALA 3	VAL 1332

There are105 helices in PDB entry 8J79. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	33	Right-handed alpha
Helix 2	AA2	A	76	80	Right-handed 310
Helix 3	AA3	A	87	91	Right-handed 310
Helix 4	AA4	A	99	108	Right-handed alpha
Helix 5	AA5	A	116	131	Right-handed alpha
Helix 6	AA6	A	135	142	Right-handed alpha
Helix 7	AA7	A	153	161	Right-handed alpha
Helix 8	AA8	A	162	164	Right-handed 310
Helix 9	AA9	A	197	201	Right-handed 310
Helix 10	AB1	A	205	209	Right-handed 310
Helix 11	AB2	A	213	220	Right-handed alpha
Helix 12	AB3	A	241	252	Right-handed alpha
Helix 13	AB4	A	263	271	Right-handed alpha
Helix 14	AB5	A	284	288	Right-handed 310
Helix 15	AB6	A	304	319	Right-handed alpha
Helix 16	AB7	A	320	323	Right-handed 310
Helix 17	AB8	A	324	336	Right-handed alpha
Helix 18	AB9	A	339	344	Right-handed alpha
Helix 19	AC1	A	347	355	Right-handed alpha
Helix 20	AC2	A	361	368	Right-handed alpha
Helix 21	AC3	A	386	390	Right-handed 310
Helix 22	AC4	A	466	472	Right-handed alpha
Helix 23	AC5	A	479	494	Right-handed alpha
Helix 24	AC6	A	504	528	Right-handed alpha
Helix 25	AC7	A	539	547	Right-handed 310
Helix 26	AC8	A	581	587	Right-handed alpha
Helix 27	AC9	A	592	596	Right-handed 310
Helix 28	AD1	A	624	628	Right-handed 310
Helix 29	AD2	A	636	640	Right-handed 310
Helix 30	AD3	A	674	684	Right-handed alpha
Helix 31	AD4	A	697	705	Right-handed alpha
Helix 32	AD5	A	718	726	Right-handed alpha
Helix 33	AD6	A	768	781	Right-handed alpha
Helix 34	AD7	A	783	785	Right-handed 310
Helix 35	AD8	A	805	820	Right-handed alpha
Helix 36	AD9	A	828	836	Right-handed alpha
Helix 37	AE1	A	873	885	Right-handed alpha
Helix 38	AE2	A	915	935	Right-handed alpha
Helix 39	AE3	A	937	946	Right-handed alpha
Helix 40	AE4	A	963	975	Right-handed alpha
Helix 41	AE5	A	976	990	Right-handed alpha
Helix 42	AE6	A	1011	1014	Right-handed 310
Helix 43	AE7	A	1041	1055	Right-handed alpha
Helix 44	AE8	A	1057	1059	Right-handed 310
Helix 45	AE9	A	1081	1108	Right-handed alpha
Helix 46	AF1	A	1112	1123	Right-handed alpha
Helix 47	AF2	A	1187	1208	Right-handed alpha
Helix 48	AF3	A	1231	1235	Right-handed 310
Helix 49	AF4	A	1252	1256	Right-handed 310
Helix 50	AF5	A	1263	1266	Right-handed 310
Helix 51	AF6	A	1267	1286	Right-handed alpha
Helix 52	AF7	A	1301	1309	Right-handed alpha
Helix 53	AF8	A	1311	1317	Right-handed alpha
Helix 54	AF9	B	25	33	Right-handed alpha
Helix 55	AG1	B	76	80	Right-handed 310
Helix 56	AG2	B	87	91	Right-handed 310
Helix 57	AG3	B	99	108	Right-handed alpha
Helix 58	AG4	B	116	131	Right-handed alpha
Helix 59	AG5	B	135	142	Right-handed alpha
Helix 60	AG6	B	153	162	Right-handed alpha
Helix 61	AG7	B	197	201	Right-handed 310
Helix 62	AG8	B	205	209	Right-handed 310
Helix 63	AG9	B	213	220	Right-handed alpha
Helix 64	AH1	B	241	252	Right-handed alpha
Helix 65	AH2	B	263	271	Right-handed alpha
Helix 66	AH3	B	284	288	Right-handed 310
Helix 67	AH4	B	304	319	Right-handed alpha
Helix 68	AH5	B	320	323	Right-handed 310
Helix 69	AH6	B	324	336	Right-handed alpha
Helix 70	AH7	B	339	344	Right-handed alpha
Helix 71	AH8	B	347	355	Right-handed alpha
Helix 72	AH9	B	361	368	Right-handed alpha
Helix 73	AI1	B	386	390	Right-handed 310
Helix 74	AI2	B	466	472	Right-handed alpha
Helix 75	AI3	B	479	494	Right-handed alpha
Helix 76	AI4	B	504	528	Right-handed alpha
Helix 77	AI5	B	542	547	Right-handed 310
Helix 78	AI6	B	581	587	Right-handed alpha
Helix 79	AI7	B	592	596	Right-handed 310
Helix 80	AI8	B	624	628	Right-handed 310
Helix 81	AI9	B	636	640	Right-handed 310
Helix 82	AJ1	B	674	684	Right-handed alpha
Helix 83	AJ2	B	697	704	Right-handed alpha
Helix 84	AJ3	B	718	726	Right-handed alpha
Helix 85	AJ4	B	768	781	Right-handed alpha
Helix 86	AJ5	B	783	785	Right-handed 310
Helix 87	AJ6	B	805	820	Right-handed alpha
Helix 88	AJ7	B	828	836	Right-handed alpha
Helix 89	AJ8	B	873	884	Right-handed alpha
Helix 90	AJ9	B	915	935	Right-handed alpha
Helix 91	AK1	B	937	946	Right-handed alpha
Helix 92	AK2	B	963	975	Right-handed alpha
Helix 93	AK3	B	976	991	Right-handed alpha
Helix 94	AK4	B	1011	1014	Right-handed 310
Helix 95	AK5	B	1041	1055	Right-handed alpha
Helix 96	AK6	B	1057	1059	Right-handed 310
Helix 97	AK7	B	1081	1108	Right-handed alpha
Helix 98	AK8	B	1112	1123	Right-handed alpha
Helix 99	AK9	B	1187	1208	Right-handed alpha
Helix 100	AL1	B	1231	1235	Right-handed 310
Helix 101	AL2	B	1252	1256	Right-handed 310
Helix 102	AL3	B	1263	1266	Right-handed 310
Helix 103	AL4	B	1267	1286	Right-handed alpha
Helix 104	AL5	B	1301	1309	Right-handed alpha
Helix 105	AL6	B	1311	1318	Right-handed alpha

There are 20 sheets in PDB entry 8J79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	17	first strand
Strand 2	A	6	10	anti-parallel
Strand 3	A	84	86	parallel
Strand 4	A	52	59	anti-parallel
Strand 5	A	64	71	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	230	first strand
Strand 2	A	235	238	anti-parallel
Strand 3	A	277	280	parallel
Strand 4	A	256	257	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	292	first strand
Strand 2	A	296	300	anti-parallel
Strand 3	A	403	410	anti-parallel
Strand 4	A	371	376	anti-parallel
Strand 5	A	379	384	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	423	first strand
Strand 2	A	434	442	anti-parallel
Strand 3	A	449	457	anti-parallel
Strand 4	A	464	465	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	559	first strand
Strand 2	A	1238	1243	parallel
Strand 3	A	1171	1181	parallel
Strand 4	A	1152	1165	anti-parallel
Strand 5	A	994	1007	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	635	first strand
Strand 2	A	666	672	anti-parallel
Strand 3	A	603	609	anti-parallel
Strand 4	A	823	826	parallel
Strand 5	A	748	753	anti-parallel
Strand 6	A	760	764	anti-parallel
Strand 7	A	787	791	parallel
Strand 8	A	1066	1067	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	660	first strand
Strand 2	A	615	621	anti-parallel
Strand 3	A	686	691	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	646	first strand
Strand 2	A	652	653	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	716	first strand
Strand 2	A	894	902	anti-parallel
Strand 3	A	856	868	parallel
Strand 4	A	842	850	anti-parallel
Strand 5	A	728	736	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1061	1062	first strand
Strand 2	A	1029	1033	parallel
Strand 3	A	1016	1023	anti-parallel
Strand 4	A	1128	1134	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	17	first strand
Strand 2	B	6	10	anti-parallel
Strand 3	B	84	86	parallel
Strand 4	B	52	59	anti-parallel
Strand 5	B	64	71	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	B	235	238	anti-parallel
Strand 3	B	277	280	parallel
Strand 4	B	256	257	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	296	300	anti-parallel
Strand 3	B	403	410	anti-parallel
Strand 4	B	371	376	anti-parallel
Strand 5	B	379	384	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	423	first strand
Strand 2	B	434	442	anti-parallel
Strand 3	B	449	457	anti-parallel
Strand 4	B	464	465	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	555	559	first strand
Strand 2	B	1238	1243	parallel
Strand 3	B	1171	1181	parallel
Strand 4	B	1152	1165	anti-parallel
Strand 5	B	994	1007	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	631	635	first strand
Strand 2	B	666	672	anti-parallel
Strand 3	B	603	609	anti-parallel
Strand 4	B	823	826	parallel
Strand 5	B	748	753	anti-parallel
Strand 6	B	760	764	anti-parallel
Strand 7	B	787	791	parallel
Strand 8	B	1066	1067	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	659	660	first strand
Strand 2	B	615	621	anti-parallel
Strand 3	B	686	691	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	645	646	first strand
Strand 2	B	652	653	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	716	first strand
Strand 2	B	894	902	anti-parallel
Strand 3	B	856	868	parallel
Strand 4	B	842	850	anti-parallel
Strand 5	B	728	736	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1061	1062	first strand
Strand 2	B	1029	1033	parallel
Strand 3	B	1016	1023	anti-parallel
Strand 4	B	1128	1134	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J79

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J79