Analysis of interatomic Contacts of Structural Units in PDB entry:
8J7A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J7A entry

There are 16 chains in PDB entry 8J7A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	HIS 47	PRO 239
2	PRO 50	ILE 250
3	ARG 53	SER 269
4	LYS 54	THR 249
A	ASP 41	VAL 749
B	LEU 3	GLY 734
C	SER 2	TYR 81
D	GLY 62	LEU 204
E	PRO 78	VAL 141
F	SER 70	ALA 218
G	LEU 62	ASN 152
H	SER 56	PRO 141
I	ASN 5	LYS 35
J	MET 1	PHE 41
K	ASP 47	ILE 127
L	PHE 59	PHE 217

There are138 helices in PDB entry 8J7A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	76	108	Right-handed alpha
Helix 2	AA2	1	142	158	Right-handed alpha
Helix 3	AA3	1	161	167	Right-handed alpha
Helix 4	AA4	1	180	212	Right-handed alpha
Helix 5	AA5	1	216	227	Right-handed alpha
Helix 6	AA6	1	233	238	Right-handed alpha
Helix 7	AA7	2	83	117	Right-handed alpha
Helix 8	AA8	2	127	131	Right-handed 310
Helix 9	AA9	2	136	161	Right-handed alpha
Helix 10	AB1	2	185	190	Right-handed alpha
Helix 11	AB2	2	198	231	Right-handed alpha
Helix 12	AB3	2	233	244	Right-handed alpha
Helix 13	AB4	3	59	66	Right-handed alpha
Helix 14	AB5	3	92	124	Right-handed alpha
Helix 15	AB6	3	127	131	Right-handed 310
Helix 16	AB7	3	140	144	Right-handed 310
Helix 17	AB8	3	151	176	Right-handed alpha
Helix 18	AB9	3	178	182	Right-handed 310
Helix 19	AC1	3	202	207	Right-handed alpha
Helix 20	AC2	3	214	246	Right-handed alpha
Helix 21	AC3	3	249	260	Right-handed alpha
Helix 22	AC4	4	85	120	Right-handed alpha
Helix 23	AC5	4	127	132	Right-handed 310
Helix 24	AC6	4	138	163	Right-handed alpha
Helix 25	AC7	4	187	191	Right-handed 310
Helix 26	AC8	4	198	226	Right-handed alpha
Helix 27	AC9	4	229	240	Right-handed alpha
Helix 28	AD1	A	43	52	Right-handed alpha
Helix 29	AD2	A	55	60	Right-handed alpha
Helix 30	AD3	A	62	95	Right-handed alpha
Helix 31	AD4	A	97	104	Right-handed alpha
Helix 32	AD5	A	120	125	Right-handed 310
Helix 33	AD6	A	140	148	Right-handed alpha
Helix 34	AD7	A	152	180	Right-handed alpha
Helix 35	AD8	A	184	189	Right-handed alpha
Helix 36	AD9	A	190	201	Right-handed alpha
Helix 37	AE1	A	201	227	Right-handed alpha
Helix 38	AE2	A	230	234	Right-handed 310
Helix 39	AE3	A	236	243	Right-handed alpha
Helix 40	AE4	A	243	251	Right-handed alpha
Helix 41	AE5	A	252	257	Right-handed 310
Helix 42	AE6	A	258	263	Right-handed alpha
Helix 43	AE7	A	265	272	Right-handed 310
Helix 44	AE8	A	287	306	Right-handed alpha
Helix 45	AE9	A	318	326	Right-handed alpha
Helix 46	AF1	A	337	344	Right-handed alpha
Helix 47	AF2	A	345	370	Right-handed alpha
Helix 48	AF3	A	380	413	Right-handed alpha
Helix 49	AF4	A	421	429	Right-handed alpha
Helix 50	AF5	A	430	462	Right-handed alpha
Helix 51	AF6	A	464	468	Right-handed 310
Helix 52	AF7	A	478	491	Right-handed alpha
Helix 53	AF8	A	527	554	Right-handed alpha
Helix 54	AF9	A	563	568	Right-handed alpha
Helix 55	AG1	A	576	580	Right-handed 310
Helix 56	AG2	A	585	616	Right-handed alpha
Helix 57	AG3	A	633	638	Right-handed alpha
Helix 58	AG4	A	640	647	Right-handed alpha
Helix 59	AG5	A	648	653	Right-handed alpha
Helix 60	AG6	A	655	659	Right-handed 310
Helix 61	AG7	A	664	687	Right-handed alpha
Helix 62	AG8	A	689	705	Right-handed alpha
Helix 63	AG9	A	718	749	Right-handed alpha
Helix 64	AH1	B	9	14	Right-handed alpha
Helix 65	AH2	B	18	27	Right-handed alpha
Helix 66	AH3	B	30	34	Right-handed 310
Helix 67	AH4	B	38	72	Right-handed alpha
Helix 68	AH5	B	73	80	Right-handed alpha
Helix 69	AH6	B	81	84	Right-handed 310
Helix 70	AH7	B	97	104	Right-handed alpha
Helix 71	AH8	B	119	127	Right-handed alpha
Helix 72	AH9	B	131	157	Right-handed alpha
Helix 73	AI1	B	158	162	Right-handed 310
Helix 74	AI2	B	164	169	Right-handed alpha
Helix 75	AI3	B	170	181	Right-handed alpha
Helix 76	AI4	B	183	197	Right-handed alpha
Helix 77	AI5	B	197	203	Right-handed alpha
Helix 78	AI6	B	222	228	Right-handed alpha
Helix 79	AI7	B	229	235	Right-handed 310
Helix 80	AI8	B	269	288	Right-handed alpha
Helix 81	AI9	B	300	307	Right-handed alpha
Helix 82	AJ1	B	321	329	Right-handed alpha
Helix 83	AJ2	B	329	353	Right-handed alpha
Helix 84	AJ3	B	364	397	Right-handed alpha
Helix 85	AJ4	B	406	414	Right-handed alpha
Helix 86	AJ5	B	414	446	Right-handed alpha
Helix 87	AJ6	B	448	452	Right-handed 310
Helix 88	AJ7	B	457	467	Right-handed alpha
Helix 89	AJ8	B	476	480	Right-handed 310
Helix 90	AJ9	B	483	490	Right-handed alpha
Helix 91	AK1	B	493	502	Right-handed alpha
Helix 92	AK2	B	513	540	Right-handed alpha
Helix 93	AK3	B	549	554	Right-handed 310
Helix 94	AK4	B	572	604	Right-handed alpha
Helix 95	AK5	B	606	613	Right-handed alpha
Helix 96	AK6	B	615	623	Right-handed alpha
Helix 97	AK7	B	623	628	Right-handed alpha
Helix 98	AK8	B	628	633	Right-handed alpha
Helix 99	AK9	B	643	666	Right-handed alpha
Helix 100	AL1	B	667	684	Right-handed alpha
Helix 101	AL2	B	701	734	Right-handed alpha
Helix 102	AL3	C	15	21	Right-handed alpha
Helix 103	AL4	C	44	48	Right-handed 310
Helix 104	AL5	C	54	58	Right-handed 310
Helix 105	AL6	C	73	78	Right-handed alpha
Helix 106	AL7	D	85	91	Right-handed alpha
Helix 107	AL8	D	127	142	Right-handed alpha
Helix 108	AL9	D	184	188	Right-handed 310
Helix 109	AM1	D	190	195	Right-handed 310
Helix 110	AM2	F	78	97	Right-handed alpha
Helix 111	AM3	F	103	126	Right-handed alpha
Helix 112	AM4	F	143	147	Right-handed 310
Helix 113	AM5	F	150	176	Right-handed alpha
Helix 114	AM6	F	180	186	Right-handed 310
Helix 115	AM7	F	189	200	Right-handed alpha
Helix 116	AM8	F	202	214	Right-handed alpha
Helix 117	AM9	G	64	69	Right-handed alpha
Helix 118	AN1	G	70	82	Right-handed alpha
Helix 119	AN2	G	83	95	Right-handed alpha
Helix 120	AN3	G	128	150	Right-handed alpha
Helix 121	AN4	H	63	68	Right-handed alpha
Helix 122	AN5	H	83	94	Right-handed alpha
Helix 123	AN6	H	95	98	Right-handed 310
Helix 124	AN7	H	99	121	Right-handed alpha
Helix 125	AN8	H	127	132	Right-handed alpha
Helix 126	AN9	I	6	33	Right-handed alpha
Helix 127	AO1	J	2	9	Right-handed alpha
Helix 128	AO2	J	10	33	Right-handed alpha
Helix 129	AO3	K	51	70	Right-handed alpha
Helix 130	AO4	K	102	127	Right-handed alpha
Helix 131	AO5	L	66	68	Right-handed 310
Helix 132	AO6	L	76	81	Right-handed alpha
Helix 133	AO7	L	81	90	Right-handed alpha
Helix 134	AO8	L	91	95	Right-handed 310
Helix 135	AO9	L	99	123	Right-handed alpha
Helix 136	AP1	L	130	158	Right-handed alpha
Helix 137	AP2	L	179	182	Right-handed 310
Helix 138	AP3	L	183	211	Right-handed alpha

There are 12 sheets in PDB entry 8J7A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	133	136	anti-parallel
Strand 3	A	126	127	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	515	first strand
Strand 2	A	518	521	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	620	first strand
Strand 2	A	626	628	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	180	181	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	125	first strand
Strand 2	D	93	100	anti-parallel
Strand 3	D	146	151	anti-parallel
Strand 4	D	157	161	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	107	first strand
Strand 2	D	113	116	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	133	first strand
Strand 2	E	116	119	anti-parallel
Strand 3	E	100	105	anti-parallel
Strand 4	E	86	89	anti-parallel
Strand 5	E	138	140	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	74	first strand
Strand 2	F	129	130	anti-parallel
Strand 3	F	136	137	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	98	99	first strand
Strand 2	G	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	63	64	first strand
Strand 2	L	74	75	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J7A

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J7A