Analysis of interatomic Contacts of Structural Units in PDB entry:
8J7B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J7B entry

There are 16 chains in PDB entry 8J7B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	HIS 47	PRO 239
2	PRO 50	ILE 250
3	ARG 53	LEU 270
4	LYS 54	THR 249
A	LEU 13	VAL 749
B	LEU 3	GLY 734
C	SER 2	TYR 81
D	GLY 62	LEU 204
E	PRO 78	VAL 141
F	ASP 68	LYS 219
G	LEU 62	ASN 152
H	SER 56	LEU 145
I	ASN 5	LYS 35
J	MET 1	PHE 41
K	ASP 47	ILE 130
L	THR 58	PHE 217

There are148 helices in PDB entry 8J7B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	76	107	Right-handed alpha
Helix 2	AA2	1	113	117	Right-handed 310
Helix 3	AA3	1	137	158	Right-handed alpha
Helix 4	AA4	1	169	173	Right-handed 310
Helix 5	AA5	1	180	212	Right-handed alpha
Helix 6	AA6	1	216	227	Right-handed alpha
Helix 7	AA7	1	233	238	Right-handed alpha
Helix 8	AA8	2	83	118	Right-handed alpha
Helix 9	AA9	2	136	161	Right-handed alpha
Helix 10	AB1	2	185	190	Right-handed alpha
Helix 11	AB2	2	198	231	Right-handed alpha
Helix 12	AB3	2	233	244	Right-handed alpha
Helix 13	AB4	3	61	65	Right-handed 310
Helix 14	AB5	3	92	114	Right-handed alpha
Helix 15	AB6	3	115	123	Right-handed alpha
Helix 16	AB7	3	140	144	Right-handed 310
Helix 17	AB8	3	151	176	Right-handed alpha
Helix 18	AB9	3	187	191	Right-handed 310
Helix 19	AC1	3	202	207	Right-handed alpha
Helix 20	AC2	3	214	247	Right-handed alpha
Helix 21	AC3	3	249	260	Right-handed alpha
Helix 22	AC4	3	265	270	Right-handed alpha
Helix 23	AC5	4	85	112	Right-handed alpha
Helix 24	AC6	4	113	119	Right-handed 310
Helix 25	AC7	4	138	163	Right-handed alpha
Helix 26	AC8	4	187	191	Right-handed 310
Helix 27	AC9	4	198	227	Right-handed alpha
Helix 28	AD1	4	229	240	Right-handed alpha
Helix 29	AD2	A	23	28	Right-handed 310
Helix 30	AD3	A	35	39	Right-handed 310
Helix 31	AD4	A	43	52	Right-handed alpha
Helix 32	AD5	A	55	60	Right-handed alpha
Helix 33	AD6	A	62	95	Right-handed alpha
Helix 34	AD7	A	97	103	Right-handed alpha
Helix 35	AD8	A	120	125	Right-handed 310
Helix 36	AD9	A	140	148	Right-handed alpha
Helix 37	AE1	A	152	180	Right-handed alpha
Helix 38	AE2	A	184	189	Right-handed alpha
Helix 39	AE3	A	190	201	Right-handed alpha
Helix 40	AE4	A	203	217	Right-handed alpha
Helix 41	AE5	A	217	227	Right-handed alpha
Helix 42	AE6	A	230	234	Right-handed 310
Helix 43	AE7	A	238	243	Right-handed alpha
Helix 44	AE8	A	243	251	Right-handed alpha
Helix 45	AE9	A	252	257	Right-handed 310
Helix 46	AF1	A	258	263	Right-handed alpha
Helix 47	AF2	A	265	272	Right-handed 310
Helix 48	AF3	A	287	306	Right-handed alpha
Helix 49	AF4	A	318	325	Right-handed alpha
Helix 50	AF5	A	337	343	Right-handed alpha
Helix 51	AF6	A	345	371	Right-handed alpha
Helix 52	AF7	A	380	413	Right-handed alpha
Helix 53	AF8	A	421	429	Right-handed alpha
Helix 54	AF9	A	430	463	Right-handed alpha
Helix 55	AG1	A	464	468	Right-handed 310
Helix 56	AG2	A	478	490	Right-handed alpha
Helix 57	AG3	A	504	508	Right-handed 310
Helix 58	AG4	A	527	554	Right-handed alpha
Helix 59	AG5	A	585	616	Right-handed alpha
Helix 60	AG6	A	633	638	Right-handed alpha
Helix 61	AG7	A	640	648	Right-handed alpha
Helix 62	AG8	A	648	653	Right-handed alpha
Helix 63	AG9	A	653	658	Right-handed alpha
Helix 64	AH1	A	664	681	Right-handed alpha
Helix 65	AH2	A	681	687	Right-handed alpha
Helix 66	AH3	A	688	706	Right-handed alpha
Helix 67	AH4	A	718	749	Right-handed alpha
Helix 68	AH5	B	9	14	Right-handed alpha
Helix 69	AH6	B	18	27	Right-handed alpha
Helix 70	AH7	B	30	34	Right-handed 310
Helix 71	AH8	B	38	72	Right-handed alpha
Helix 72	AH9	B	73	80	Right-handed alpha
Helix 73	AI1	B	81	84	Right-handed 310
Helix 74	AI2	B	97	104	Right-handed alpha
Helix 75	AI3	B	119	127	Right-handed alpha
Helix 76	AI4	B	131	156	Right-handed alpha
Helix 77	AI5	B	157	162	Right-handed 310
Helix 78	AI6	B	164	169	Right-handed alpha
Helix 79	AI7	B	170	182	Right-handed alpha
Helix 80	AI8	B	183	197	Right-handed alpha
Helix 81	AI9	B	197	203	Right-handed alpha
Helix 82	AJ1	B	222	228	Right-handed alpha
Helix 83	AJ2	B	229	235	Right-handed 310
Helix 84	AJ3	B	269	288	Right-handed alpha
Helix 85	AJ4	B	300	307	Right-handed alpha
Helix 86	AJ5	B	321	329	Right-handed alpha
Helix 87	AJ6	B	329	353	Right-handed alpha
Helix 88	AJ7	B	364	397	Right-handed alpha
Helix 89	AJ8	B	406	412	Right-handed alpha
Helix 90	AJ9	B	414	446	Right-handed alpha
Helix 91	AK1	B	448	452	Right-handed 310
Helix 92	AK2	B	457	467	Right-handed alpha
Helix 93	AK3	B	476	480	Right-handed 310
Helix 94	AK4	B	483	490	Right-handed alpha
Helix 95	AK5	B	493	502	Right-handed alpha
Helix 96	AK6	B	513	540	Right-handed alpha
Helix 97	AK7	B	549	554	Right-handed 310
Helix 98	AK8	B	562	566	Right-handed 310
Helix 99	AK9	B	571	604	Right-handed alpha
Helix 100	AL1	B	605	613	Right-handed alpha
Helix 101	AL2	B	615	623	Right-handed alpha
Helix 102	AL3	B	623	628	Right-handed alpha
Helix 103	AL4	B	643	666	Right-handed alpha
Helix 104	AL5	B	667	684	Right-handed alpha
Helix 105	AL6	B	701	734	Right-handed alpha
Helix 106	AL7	C	15	20	Right-handed alpha
Helix 107	AL8	C	44	48	Right-handed 310
Helix 108	AL9	D	85	91	Right-handed alpha
Helix 109	AM1	D	127	142	Right-handed alpha
Helix 110	AM2	D	184	188	Right-handed 310
Helix 111	AM3	D	190	195	Right-handed 310
Helix 112	AM4	F	68	72	Right-handed 310
Helix 113	AM5	F	78	97	Right-handed alpha
Helix 114	AM6	F	103	126	Right-handed alpha
Helix 115	AM7	F	143	145	Right-handed 310
Helix 116	AM8	F	146	175	Right-handed alpha
Helix 117	AM9	F	176	178	Right-handed 310
Helix 118	AN1	F	182	187	Right-handed alpha
Helix 119	AN2	F	189	198	Right-handed alpha
Helix 120	AN3	F	199	201	Right-handed 310
Helix 121	AN4	F	202	213	Right-handed alpha
Helix 122	AN5	G	64	69	Right-handed alpha
Helix 123	AN6	G	70	82	Right-handed alpha
Helix 124	AN7	G	83	94	Right-handed alpha
Helix 125	AN8	G	109	113	Right-handed 310
Helix 126	AN9	G	115	120	Right-handed alpha
Helix 127	AO1	G	128	150	Right-handed alpha
Helix 128	AO2	H	63	68	Right-handed alpha
Helix 129	AO3	H	83	95	Right-handed alpha
Helix 130	AO4	H	96	98	Right-handed 310
Helix 131	AO5	H	99	121	Right-handed alpha
Helix 132	AO6	H	127	132	Right-handed alpha
Helix 133	AO7	H	140	144	Right-handed 310
Helix 134	AO8	I	7	17	Right-handed alpha
Helix 135	AO9	I	17	32	Right-handed alpha
Helix 136	AP1	J	2	9	Right-handed alpha
Helix 137	AP2	J	10	33	Right-handed alpha
Helix 138	AP3	K	51	70	Right-handed alpha
Helix 139	AP4	K	102	127	Right-handed alpha
Helix 140	AP5	L	66	68	Right-handed 310
Helix 141	AP6	L	76	81	Right-handed alpha
Helix 142	AP7	L	81	90	Right-handed alpha
Helix 143	AP8	L	91	95	Right-handed 310
Helix 144	AP9	L	99	115	Right-handed alpha
Helix 145	AQ1	L	115	123	Right-handed alpha
Helix 146	AQ2	L	130	158	Right-handed alpha
Helix 147	AQ3	L	179	182	Right-handed 310
Helix 148	AQ4	L	183	211	Right-handed alpha

There are 16 sheets in PDB entry 8J7B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	127	128	first strand
Strand 2	1	131	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	181	183	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	133	136	anti-parallel
Strand 3	A	126	127	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	515	first strand
Strand 2	A	518	521	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	620	first strand
Strand 2	A	626	628	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	636	first strand
Strand 2	B	639	640	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	180	181	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	125	first strand
Strand 2	D	93	100	anti-parallel
Strand 3	D	146	151	anti-parallel
Strand 4	D	157	161	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	107	first strand
Strand 2	D	113	116	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	133	first strand
Strand 2	E	116	119	anti-parallel
Strand 3	E	100	106	anti-parallel
Strand 4	E	86	89	anti-parallel
Strand 5	E	138	140	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	74	first strand
Strand 2	F	129	130	anti-parallel
Strand 3	F	136	137	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	98	99	first strand
Strand 2	G	102	103	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	78	80	first strand
Strand 2	K	86	88	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	63	64	first strand
Strand 2	L	74	75	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J7B

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J7B