Analysis of interatomic Contacts of Structural Units in PDB entry:
8J7E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J7E entry

There are 6 chains in PDB entry 8J7E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	PRO 225
B	THR 6	GLY 216
C	GLU 4	PRO 225
D	THR 6	GLY 216
E	ASP 2	LEU 106
F	ASP 2	LEU 106

There are 28 helices in PDB entry 8J7E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	68	Right-handed 310
Helix 2	AA2	A	90	94	Right-handed 310
Helix 3	AA3	A	107	111	Right-handed 310
Helix 4	AA4	A	168	170	Right-handed 310
Helix 5	AA5	A	199	202	Right-handed 310
Helix 6	AA6	B	80	84	Right-handed 310
Helix 7	AA7	B	125	130	Right-handed alpha
Helix 8	AA8	B	187	192	Right-handed alpha
Helix 9	AA9	C	90	94	Right-handed 310
Helix 10	AB1	C	107	111	Right-handed 310
Helix 11	AB2	C	168	170	Right-handed 310
Helix 12	AB3	C	199	201	Right-handed 310
Helix 13	AB4	C	213	216	Right-handed 310
Helix 14	AB5	D	80	84	Right-handed 310
Helix 15	AB6	D	125	130	Right-handed alpha
Helix 16	AB7	D	187	192	Right-handed alpha
Helix 17	AB8	E	3	19	Right-handed alpha
Helix 18	AB9	E	22	41	Right-handed alpha
Helix 19	AC1	E	45	49	Right-handed 310
Helix 20	AC2	E	55	81	Right-handed alpha
Helix 21	AC3	E	83	92	Right-handed alpha
Helix 22	AC4	E	93	105	Right-handed alpha
Helix 23	AC5	F	3	19	Right-handed alpha
Helix 24	AC6	F	22	42	Right-handed alpha
Helix 25	AC7	F	45	49	Right-handed 310
Helix 26	AC8	F	55	81	Right-handed alpha
Helix 27	AC9	F	83	93	Right-handed alpha
Helix 28	AD1	F	93	106	Right-handed alpha

There are 18 sheets in PDB entry 8J7E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	10	first strand
Strand 2	A	21	28	anti-parallel
Strand 3	A	81	86	anti-parallel
Strand 4	A	71	76	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	119	123	parallel
Strand 3	A	95	101	anti-parallel
Strand 4	A	37	42	anti-parallel
Strand 5	A	48	54	anti-parallel
Strand 6	A	61	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	119	123	parallel
Strand 3	A	95	101	anti-parallel
Strand 4	A	114	115	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	147	157	anti-parallel
Strand 3	A	188	197	anti-parallel
Strand 4	A	175	177	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	147	157	anti-parallel
Strand 3	A	188	197	anti-parallel
Strand 4	A	181	182	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	166	first strand
Strand 2	A	206	212	anti-parallel
Strand 3	A	217	223	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	106	110	parallel
Strand 3	B	86	90	anti-parallel
Strand 4	B	35	39	anti-parallel
Strand 5	B	46	50	anti-parallel
Strand 6	B	54	55	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	68	first strand
Strand 2	B	71	76	anti-parallel
Strand 3	B	19	25	anti-parallel
Strand 4	D	157	160	parallel
Strand 5	D	148	154	anti-parallel
Strand 6	D	195	202	anti-parallel
Strand 7	D	209	214	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	133	143	anti-parallel
Strand 3	B	177	186	anti-parallel
Strand 4	B	163	167	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	214	first strand
Strand 2	B	195	202	anti-parallel
Strand 3	B	148	154	anti-parallel
Strand 4	B	157	160	anti-parallel
Strand 5	D	19	25	parallel
Strand 6	D	71	76	anti-parallel
Strand 7	D	63	68	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	10	first strand
Strand 2	C	21	28	anti-parallel
Strand 3	C	81	86	anti-parallel
Strand 4	C	71	76	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	119	123	parallel
Strand 3	C	95	101	anti-parallel
Strand 4	C	37	42	anti-parallel
Strand 5	C	48	54	anti-parallel
Strand 6	C	61	63	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	119	123	parallel
Strand 3	C	95	101	anti-parallel
Strand 4	C	114	115	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	147	157	anti-parallel
Strand 3	C	188	197	anti-parallel
Strand 4	C	175	177	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	147	157	anti-parallel
Strand 3	C	188	197	anti-parallel
Strand 4	C	181	182	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	166	first strand
Strand 2	C	206	212	anti-parallel
Strand 3	C	217	223	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	106	110	parallel
Strand 3	D	86	90	anti-parallel
Strand 4	D	35	39	anti-parallel
Strand 5	D	46	50	anti-parallel
Strand 6	D	54	55	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	133	143	anti-parallel
Strand 3	D	177	186	anti-parallel
Strand 4	D	163	167	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J7E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J7E