Analysis of interatomic Contacts of Structural Units in PDB entry:
8J7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J7F entry

There are 5 chains in PDB entry 8J7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 69ASP 357
B
 TRP 69ASP 357
C
 TRP 69ASP 357
D
 TRP 69ASP 357
E
 ILE 2ALA 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8J7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 81Right-handed alpha
Helix 2
AA2
A
82 107Right-handed alpha
Helix 3
AA3
A
114 139Right-handed alpha
Helix 4
AA4
A
148 172Right-handed alpha
Helix 5
AA5
A
179 191Right-handed 310
Helix 6
AA6
A
192 197Right-handed alpha
Helix 7
AA7
A
197 237Right-handed alpha
Helix 8
AA8
A
258 264Right-handed alpha
Helix 9
AA9
A
282 289Right-handed alpha
Helix 10
AB1
A
290 304Right-handed alpha
Helix 11
AB2
A
311 319Right-handed alpha
Helix 12
AB3
A
323 337Right-handed alpha
Helix 13
AB4
A
338 357Right-handed alpha
Helix 14
AB5
B
72 81Right-handed alpha
Helix 15
AB6
B
82 107Right-handed alpha
Helix 16
AB7
B
114 141Right-handed alpha
Helix 17
AB8
B
148 172Right-handed alpha
Helix 18
AB9
B
179 191Right-handed 310
Helix 19
AC1
B
192 197Right-handed alpha
Helix 20
AC2
B
197 237Right-handed alpha
Helix 21
AC3
B
258 264Right-handed alpha
Helix 22
AC4
B
282 289Right-handed alpha
Helix 23
AC5
B
290 304Right-handed alpha
Helix 24
AC6
B
311 319Right-handed alpha
Helix 25
AC7
B
323 338Right-handed alpha
Helix 26
AC8
B
340 357Right-handed alpha
Helix 27
AC9
C
72 81Right-handed alpha
Helix 28
AD1
C
82 107Right-handed alpha
Helix 29
AD2
C
114 139Right-handed alpha
Helix 30
AD3
C
148 172Right-handed alpha
Helix 31
AD4
C
179 191Right-handed 310
Helix 32
AD5
C
192 197Right-handed alpha
Helix 33
AD6
C
197 237Right-handed alpha
Helix 34
AD7
C
258 264Right-handed alpha
Helix 35
AD8
C
282 289Right-handed alpha
Helix 36
AD9
C
290 304Right-handed alpha
Helix 37
AE1
C
311 319Right-handed alpha
Helix 38
AE2
C
323 337Right-handed alpha
Helix 39
AE3
C
338 357Right-handed alpha
Helix 40
AE4
D
72 81Right-handed alpha
Helix 41
AE5
D
82 107Right-handed alpha
Helix 42
AE6
D
114 139Right-handed alpha
Helix 43
AE7
D
148 172Right-handed alpha
Helix 44
AE8
D
179 191Right-handed 310
Helix 45
AE9
D
192 197Right-handed alpha
Helix 46
AF1
D
197 237Right-handed alpha
Helix 47
AF2
D
258 264Right-handed alpha
Helix 48
AF3
D
282 289Right-handed alpha
Helix 49
AF4
D
290 304Right-handed alpha
Helix 50
AF5
D
311 319Right-handed alpha
Helix 51
AF6
D
323 337Right-handed alpha
Helix 52
AF7
D
339 357Right-handed alpha
Helix 53
AF8
E
3 21Right-handed alpha
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There are 4 sheets in PDB entry 8J7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 248first strand
Strand 2
A
270 274anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 248first strand
Strand 2
B
270 274anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
244 248first strand
Strand 2
C
270 274anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
244 248first strand
Strand 2
D
270 274anti-parallel
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