Analysis of interatomic Contacts of Structural Units in PDB entry:
8J7K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J7K entry

There are 2 chains in PDB entry 8J7K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11ASN 360
B
 LYS 12ASN 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8J7K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
82 87Right-handed alpha
Helix 2
AA2
A
94 102Right-handed alpha
Helix 3
AA3
A
143 151Right-handed alpha
Helix 4
AA4
A
170 176Right-handed alpha
Helix 5
AA5
A
185 201Right-handed alpha
Helix 6
AA6
A
210 222Right-handed alpha
Helix 7
AA7
A
263 268Right-handed alpha
Helix 8
AA8
A
269 272Right-handed 310
Helix 9
AA9
A
291 314Right-handed alpha
Helix 10
AB1
A
324 327Right-handed 310
Helix 11
AB2
A
334 338Right-handed 310
Helix 12
AB3
A
340 355Right-handed alpha
Helix 13
AB4
B
82 87Right-handed alpha
Helix 14
AB5
B
94 102Right-handed alpha
Helix 15
AB6
B
143 151Right-handed alpha
Helix 16
AB7
B
170 177Right-handed alpha
Helix 17
AB8
B
185 201Right-handed alpha
Helix 18
AB9
B
210 222Right-handed alpha
Helix 19
AC1
B
263 268Right-handed alpha
Helix 20
AC2
B
269 272Right-handed 310
Helix 21
AC3
B
291 313Right-handed alpha
Helix 22
AC4
B
324 327Right-handed 310
Helix 23
AC5
B
334 338Right-handed 310
Helix 24
AC6
B
340 355Right-handed alpha
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There are 9 sheets in PDB entry 8J7K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 322first strand
Strand 2
A
274 279parallel
Strand 3
A
225 231parallel
Strand 4
A
203 208parallel
Strand 5
A
72 74parallel
Strand 6
A
106 110parallel
Strand 7
A
57 64anti-parallel
Strand 8
A
15 25anti-parallel
Strand 9
B
15 25anti-parallel
Strand 10
B
57 64anti-parallel
Strand 11
B
106 110anti-parallel
Strand 12
B
72 74parallel
Strand 13
B
203 208parallel
Strand 14
B
225 231parallel
Strand 15
B
274 279parallel
Strand 16
B
317 322parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
51 54anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
B
138 139anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
132 133anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
B
124 125anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
260 262parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
51 54anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
132 133anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
260 262parallel
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