Analysis of interatomic Contacts of Structural Units in PDB entry:
8J7U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J7U entry

There are 6 chains in PDB entry 8J7U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 22	MET 376
E	GLU 1	ARG 218
C	ASP 1	ARG 215
D	ASP 1	ARG 215
F	GLU 1	ARG 218
B	ILE 22	MET 376

There are 32 helices in PDB entry 8J7U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	32	Right-handed alpha
Helix 2	AA2	A	33	57	Right-handed alpha
Helix 3	AA3	A	71	88	Right-handed alpha
Helix 4	AA4	A	102	132	Right-handed alpha
Helix 5	AA5	A	138	142	Right-handed 310
Helix 6	AA6	A	143	159	Right-handed alpha
Helix 7	AA7	A	231	259	Right-handed alpha
Helix 8	AA8	A	267	294	Right-handed alpha
Helix 9	AA9	A	298	303	Right-handed alpha
Helix 10	AB1	A	304	314	Right-handed alpha
Helix 11	AB2	A	347	362	Right-handed alpha
Helix 12	AB3	E	63	65	Right-handed 310
Helix 13	AB4	E	86	90	Right-handed 310
Helix 14	AB5	E	161	163	Right-handed 310
Helix 15	AB6	C	83	87	Right-handed 310
Helix 16	AB7	C	125	131	Right-handed alpha
Helix 17	AB8	C	187	192	Right-handed alpha
Helix 18	AB9	D	125	131	Right-handed alpha
Helix 19	AC1	D	187	193	Right-handed alpha
Helix 20	AC2	F	63	65	Right-handed 310
Helix 21	AC3	F	86	90	Right-handed 310
Helix 22	AC4	F	161	163	Right-handed 310
Helix 23	AC5	B	23	30	Right-handed alpha
Helix 24	AC6	B	32	57	Right-handed alpha
Helix 25	AC7	B	60	88	Right-handed alpha
Helix 26	AC8	B	101	132	Right-handed alpha
Helix 27	AC9	B	139	159	Right-handed alpha
Helix 28	AD1	B	231	259	Right-handed alpha
Helix 29	AD2	B	267	294	Right-handed alpha
Helix 30	AD3	B	298	303	Right-handed alpha
Helix 31	AD4	B	304	314	Right-handed alpha
Helix 32	AD5	B	347	362	Right-handed alpha

There are 26 sheets in PDB entry 8J7U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	329	first strand
Strand 2	A	333	342	anti-parallel
Strand 3	A	366	373	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	59	first strand
Strand 2	E	44	51	anti-parallel
Strand 3	E	34	40	anti-parallel
Strand 4	E	91	98	anti-parallel
Strand 5	E	105	108	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	59	first strand
Strand 2	E	44	51	anti-parallel
Strand 3	E	34	40	anti-parallel
Strand 4	E	91	98	anti-parallel
Strand 5	E	112	114	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	140	150	anti-parallel
Strand 3	E	179	189	anti-parallel
Strand 4	E	169	170	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	140	150	anti-parallel
Strand 3	E	179	189	anti-parallel
Strand 4	E	174	176	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	159	first strand
Strand 2	E	199	204	anti-parallel
Strand 3	E	209	214	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	74	79	anti-parallel
Strand 4	C	66	71	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	106	111	parallel
Strand 3	C	89	94	anti-parallel
Strand 4	C	37	42	anti-parallel
Strand 5	C	49	53	anti-parallel
Strand 6	C	57	58	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	106	111	parallel
Strand 3	C	89	94	anti-parallel
Strand 4	C	101	102	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	34	35	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	133	143	anti-parallel
Strand 3	C	177	186	anti-parallel
Strand 4	C	163	167	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	153	first strand
Strand 2	C	195	202	anti-parallel
Strand 3	C	205	214	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	74	79	anti-parallel
Strand 4	D	66	71	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	106	111	parallel
Strand 3	D	89	94	anti-parallel
Strand 4	D	37	42	anti-parallel
Strand 5	D	49	53	anti-parallel
Strand 6	D	57	58	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	106	111	parallel
Strand 3	D	89	94	anti-parallel
Strand 4	D	101	102	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	34	35	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	122	first strand
Strand 2	D	133	143	anti-parallel
Strand 3	D	177	186	anti-parallel
Strand 4	D	163	167	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	149	154	anti-parallel
Strand 3	D	195	202	anti-parallel
Strand 4	D	205	214	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	112	116	parallel
Strand 3	F	91	98	anti-parallel
Strand 4	F	34	40	anti-parallel
Strand 5	F	44	51	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	112	116	parallel
Strand 3	F	91	98	anti-parallel
Strand 4	F	105	107	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	129	first strand
Strand 2	F	140	150	anti-parallel
Strand 3	F	180	189	anti-parallel
Strand 4	F	169	170	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	129	first strand
Strand 2	F	140	150	anti-parallel
Strand 3	F	180	189	anti-parallel
Strand 4	F	174	175	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	159	first strand
Strand 2	F	199	204	anti-parallel
Strand 3	F	209	214	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	329	first strand
Strand 2	B	333	342	anti-parallel
Strand 3	B	364	373	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J7U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J7U