Analysis of interatomic Contacts of Structural Units in PDB entry:
8J7Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J7Y entry

There are 6 chains in PDB entry 8J7Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 22	MET 376
E	GLU 1	ARG 218
C	ASP 1	ARG 215
F	GLU 1	ARG 218
B	ILE 22	MET 376
D	ASP 1	ARG 215

There are 28 helices in PDB entry 8J7Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	32	Right-handed alpha
Helix 2	AA2	A	32	57	Right-handed alpha
Helix 3	AA3	A	61	88	Right-handed alpha
Helix 4	AA4	A	102	132	Right-handed alpha
Helix 5	AA5	A	143	159	Right-handed alpha
Helix 6	AA6	A	232	259	Right-handed alpha
Helix 7	AA7	A	267	294	Right-handed alpha
Helix 8	AA8	A	303	314	Right-handed alpha
Helix 9	AA9	A	347	362	Right-handed alpha
Helix 10	AB1	E	86	90	Right-handed 310
Helix 11	AB2	E	161	163	Right-handed 310
Helix 12	AB3	C	83	87	Right-handed 310
Helix 13	AB4	C	125	132	Right-handed alpha
Helix 14	AB5	C	187	192	Right-handed alpha
Helix 15	AB6	F	86	90	Right-handed 310
Helix 16	AB7	F	161	163	Right-handed 310
Helix 17	AB8	B	23	32	Right-handed alpha
Helix 18	AB9	B	32	57	Right-handed alpha
Helix 19	AC1	B	61	88	Right-handed alpha
Helix 20	AC2	B	102	132	Right-handed alpha
Helix 21	AC3	B	143	159	Right-handed alpha
Helix 22	AC4	B	232	259	Right-handed alpha
Helix 23	AC5	B	267	294	Right-handed alpha
Helix 24	AC6	B	303	314	Right-handed alpha
Helix 25	AC7	B	347	362	Right-handed alpha
Helix 26	AC8	D	83	87	Right-handed 310
Helix 27	AC9	D	125	132	Right-handed alpha
Helix 28	AD1	D	187	192	Right-handed alpha

There are 26 sheets in PDB entry 8J7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	328	first strand
Strand 2	A	334	342	anti-parallel
Strand 3	A	366	373	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	77	83	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	112	116	parallel
Strand 3	E	91	98	anti-parallel
Strand 4	E	34	40	anti-parallel
Strand 5	E	44	51	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	112	116	parallel
Strand 3	E	91	98	anti-parallel
Strand 4	E	105	107	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	140	150	anti-parallel
Strand 3	E	179	189	anti-parallel
Strand 4	E	169	170	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	140	150	anti-parallel
Strand 3	E	179	189	anti-parallel
Strand 4	E	174	176	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	159	first strand
Strand 2	E	199	203	anti-parallel
Strand 3	E	212	214	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	74	79	anti-parallel
Strand 4	C	66	71	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	106	111	parallel
Strand 3	C	89	94	anti-parallel
Strand 4	C	37	42	anti-parallel
Strand 5	C	49	53	anti-parallel
Strand 6	C	57	58	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	106	111	parallel
Strand 3	C	89	94	anti-parallel
Strand 4	C	101	102	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	34	35	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	133	143	anti-parallel
Strand 3	C	177	186	anti-parallel
Strand 4	C	163	167	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	149	154	anti-parallel
Strand 3	C	195	202	anti-parallel
Strand 4	C	205	214	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	77	83	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	112	116	parallel
Strand 3	F	91	98	anti-parallel
Strand 4	F	34	40	anti-parallel
Strand 5	F	44	51	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	112	116	parallel
Strand 3	F	91	98	anti-parallel
Strand 4	F	105	107	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	129	first strand
Strand 2	F	140	150	anti-parallel
Strand 3	F	179	189	anti-parallel
Strand 4	F	169	170	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	129	first strand
Strand 2	F	140	150	anti-parallel
Strand 3	F	179	189	anti-parallel
Strand 4	F	174	176	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	159	first strand
Strand 2	F	199	203	anti-parallel
Strand 3	F	212	214	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	328	first strand
Strand 2	B	334	342	anti-parallel
Strand 3	B	366	373	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	74	79	anti-parallel
Strand 4	D	66	71	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	106	111	parallel
Strand 3	D	89	94	anti-parallel
Strand 4	D	37	42	anti-parallel
Strand 5	D	49	53	anti-parallel
Strand 6	D	57	58	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	106	111	parallel
Strand 3	D	89	94	anti-parallel
Strand 4	D	101	102	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	34	35	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	133	143	anti-parallel
Strand 3	D	177	186	anti-parallel
Strand 4	D	163	167	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	159	first strand
Strand 2	D	149	154	anti-parallel
Strand 3	D	195	202	anti-parallel
Strand 4	D	205	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J7Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J7Y