Analysis of interatomic Contacts of Structural Units in PDB entry:
8J83

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J83 entry

There are 2 chains in PDB entry 8J83 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 69	ALA 981
B	SER 10	ARG 567

There are 73 helices in PDB entry 8J83. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	86	94	Right-handed alpha
Helix 2	AA2	A	146	162	Right-handed alpha
Helix 3	AA3	A	175	184	Right-handed alpha
Helix 4	AA4	A	210	213	Right-handed 310
Helix 5	AA5	A	217	225	Right-handed alpha
Helix 6	AA6	A	237	241	Right-handed 310
Helix 7	AA7	A	250	254	Right-handed 310
Helix 8	AA8	A	260	266	Right-handed alpha
Helix 9	AA9	A	275	277	Right-handed 310
Helix 10	AB1	A	329	335	Right-handed alpha
Helix 11	AB2	A	336	341	Right-handed 310
Helix 12	AB3	A	367	370	Right-handed 310
Helix 13	AB4	A	376	396	Right-handed alpha
Helix 14	AB5	A	409	423	Right-handed alpha
Helix 15	AB6	A	431	436	Right-handed 310
Helix 16	AB7	A	437	449	Right-handed alpha
Helix 17	AB8	A	456	463	Right-handed 310
Helix 18	AB9	A	472	477	Right-handed alpha
Helix 19	AC1	A	477	492	Right-handed alpha
Helix 20	AC2	A	503	509	Right-handed 310
Helix 21	AC3	A	519	534	Right-handed alpha
Helix 22	AC4	A	538	545	Right-handed alpha
Helix 23	AC5	A	548	556	Right-handed alpha
Helix 24	AC6	A	557	559	Right-handed 310
Helix 25	AC7	A	560	569	Right-handed alpha
Helix 26	AC8	A	571	585	Right-handed alpha
Helix 27	AC9	A	593	598	Right-handed alpha
Helix 28	AD1	A	601	617	Right-handed alpha
Helix 29	AD2	A	634	641	Right-handed alpha
Helix 30	AD3	A	656	668	Right-handed alpha
Helix 31	AD4	A	678	688	Right-handed alpha
Helix 32	AD5	A	700	705	Right-handed alpha
Helix 33	AD6	A	707	717	Right-handed alpha
Helix 34	AD7	A	731	735	Right-handed 310
Helix 35	AD8	A	743	747	Right-handed 310
Helix 36	AD9	A	773	784	Right-handed alpha
Helix 37	AE1	A	793	803	Right-handed alpha
Helix 38	AE2	A	804	809	Right-handed 310
Helix 39	AE3	A	812	820	Right-handed alpha
Helix 40	AE4	A	885	888	Right-handed 310
Helix 41	AE5	A	889	896	Right-handed alpha
Helix 42	AE6	A	904	911	Right-handed alpha
Helix 43	AE7	A	949	957	Right-handed 310
Helix 44	AE8	B	31	43	Right-handed alpha
Helix 45	AE9	B	48	50	Right-handed 310
Helix 46	AF1	B	51	64	Right-handed alpha
Helix 47	AF2	B	68	78	Right-handed alpha
Helix 48	AF3	B	81	92	Right-handed alpha
Helix 49	AF4	B	115	121	Right-handed alpha
Helix 50	AF5	B	122	135	Right-handed alpha
Helix 51	AF6	B	149	153	Right-handed 310
Helix 52	AF7	B	167	177	Right-handed alpha
Helix 53	AF8	B	189	196	Right-handed alpha
Helix 54	AF9	B	200	208	Right-handed alpha
Helix 55	AG1	B	211	223	Right-handed alpha
Helix 56	AG2	B	233	243	Right-handed alpha
Helix 57	AG3	B	262	271	Right-handed alpha
Helix 58	AG4	B	271	286	Right-handed alpha
Helix 59	AG5	B	299	312	Right-handed alpha
Helix 60	AG6	B	328	332	Right-handed 310
Helix 61	AG7	B	333	342	Right-handed alpha
Helix 62	AG8	B	359	363	Right-handed 310
Helix 63	AG9	B	370	375	Right-handed alpha
Helix 64	AH1	B	375	383	Right-handed alpha
Helix 65	AH2	B	383	390	Right-handed alpha
Helix 66	AH3	B	420	429	Right-handed alpha
Helix 67	AH4	B	465	469	Right-handed 310
Helix 68	AH5	B	485	501	Right-handed alpha
Helix 69	AH6	B	505	520	Right-handed alpha
Helix 70	AH7	B	525	540	Right-handed alpha
Helix 71	AH8	B	542	549	Right-handed alpha
Helix 72	AH9	B	549	559	Right-handed alpha
Helix 73	AI1	B	560	563	Right-handed 310

There are 15 sheets in PDB entry 8J83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	81	first strand
Strand 2	A	70	74	anti-parallel
Strand 3	A	141	143	parallel
Strand 4	A	119	122	anti-parallel
Strand 5	A	129	130	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	271	273	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	235	first strand
Strand 2	A	242	245	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	294	first strand
Strand 2	A	303	309	anti-parallel
Strand 3	A	312	318	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	374	first strand
Strand 2	A	349	351	anti-parallel
Strand 3	A	737	740	anti-parallel
Strand 4	A	720	725	parallel
Strand 5	A	693	697	parallel
Strand 6	A	400	403	parallel
Strand 7	A	429	430	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	513	first strand
Strand 2	A	494	498	parallel
Strand 3	A	465	469	parallel
Strand 4	A	588	592	parallel
Strand 5	A	625	628	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	547	first strand
Strand 2	A	849	850	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	647	648	first strand
Strand 2	A	652	653	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	749	752	first strand
Strand 2	A	757	761	anti-parallel
Strand 3	A	821	823	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	869	874	first strand
Strand 2	A	942	946	parallel
Strand 3	A	900	903	anti-parallel
Strand 4	A	926	934	parallel
Strand 5	A	918	923	anti-parallel
Strand 6	A	974	980	anti-parallel
Strand 7	A	869	874	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	959	962	first strand
Strand 2	A	969	970	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	97	98	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	144	first strand
Strand 2	B	108	113	parallel
Strand 3	B	156	158	anti-parallel
Strand 4	B	161	163	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	324	first strand
Strand 2	B	288	295	parallel
Strand 3	B	248	254	parallel
Strand 4	B	365	369	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	416	first strand
Strand 2	B	398	405	anti-parallel
Strand 3	B	476	481	parallel
Strand 4	B	438	442	anti-parallel
Strand 5	B	451	452	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J83

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J83