Analysis of interatomic Contacts of Structural Units in PDB entry:
8J84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J84 entry

There are 2 chains in PDB entry 8J84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TYR 505
B	MET 1	GLU 450

There are 36 helices in PDB entry 8J84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	17	Right-handed 310
Helix 2	AA2	A	22	31	Right-handed alpha
Helix 3	AA3	A	46	62	Right-handed alpha
Helix 4	AA4	A	77	82	Right-handed alpha
Helix 5	AA5	A	97	105	Right-handed alpha
Helix 6	AA6	A	109	132	Right-handed alpha
Helix 7	AA7	A	144	150	Right-handed alpha
Helix 8	AA8	A	205	217	Right-handed alpha
Helix 9	AA9	A	226	230	Right-handed alpha
Helix 10	AB1	A	231	234	Right-handed 310
Helix 11	AB2	A	248	264	Right-handed alpha
Helix 12	AB3	A	331	351	Right-handed alpha
Helix 13	AB4	A	366	377	Right-handed alpha
Helix 14	AB5	A	451	464	Right-handed alpha
Helix 15	AB6	A	477	482	Right-handed alpha
Helix 16	AB7	A	482	493	Right-handed alpha
Helix 17	AB8	B	14	29	Right-handed alpha
Helix 18	AB9	B	34	39	Right-handed 310
Helix 19	AC1	B	44	56	Right-handed alpha
Helix 20	AC2	B	65	70	Right-handed alpha
Helix 21	AC3	B	71	88	Right-handed alpha
Helix 22	AC4	B	109	114	Right-handed alpha
Helix 23	AC5	B	123	138	Right-handed alpha
Helix 24	AC6	B	146	158	Right-handed alpha
Helix 25	AC7	B	190	194	Right-handed 310
Helix 26	AC8	B	199	203	Right-handed 310
Helix 27	AC9	B	221	226	Right-handed 310
Helix 28	AD1	B	243	249	Right-handed alpha
Helix 29	AD2	B	257	277	Right-handed alpha
Helix 30	AD3	B	278	280	Right-handed 310
Helix 31	AD4	B	300	304	Right-handed 310
Helix 32	AD5	B	353	366	Right-handed alpha
Helix 33	AD6	B	369	385	Right-handed alpha
Helix 34	AD7	B	422	424	Right-handed 310
Helix 35	AD8	B	425	434	Right-handed alpha
Helix 36	AD9	B	441	448	Right-handed alpha

There are 12 sheets in PDB entry 8J84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	409	412	anti-parallel
Strand 3	A	417	420	anti-parallel
Strand 4	A	441	447	anti-parallel
Strand 5	A	382	389	anti-parallel
Strand 6	A	356	361	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	12	14	anti-parallel
Strand 3	A	270	271	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	95	first strand
Strand 2	A	42	45	parallel
Strand 3	A	139	143	parallel
Strand 4	A	221	225	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	287	first strand
Strand 2	A	296	304	anti-parallel
Strand 3	A	318	319	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	287	first strand
Strand 2	A	296	304	anti-parallel
Strand 3	A	311	314	anti-parallel
Strand 4	A	501	502	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	B	169	172	anti-parallel
Strand 3	B	411	412	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	431	432	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	32	33	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	96	98	parallel
Strand 3	B	118	119	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	286	first strand
Strand 2	B	291	294	anti-parallel
Strand 3	B	317	328	anti-parallel
Strand 4	B	311	314	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	286	first strand
Strand 2	B	291	294	anti-parallel
Strand 3	B	317	328	anti-parallel
Strand 4	B	334	344	anti-parallel
Strand 5	B	175	180	anti-parallel
Strand 6	B	400	404	anti-parallel
Strand 7	B	390	394	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	213	216	anti-parallel
Strand 3	B	184	188	anti-parallel
Strand 4	B	239	242	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J84

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J84