Analysis of interatomic Contacts of Structural Units in PDB entry:
8J86

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J86 entry

There are 5 chains in PDB entry 8J86 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	TYR 1004
B	ILE 6	PHE 216
C	THR 2	LEU 424
P	T 12	T 25
T	T -3	A 17

There are 51 helices in PDB entry 8J86. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	48	Right-handed alpha
Helix 2	AA2	A	109	118	Right-handed alpha
Helix 3	AA3	A	209	220	Right-handed alpha
Helix 4	AA4	A	240	254	Right-handed alpha
Helix 5	AA5	A	267	280	Right-handed alpha
Helix 6	AA6	A	331	336	Right-handed alpha
Helix 7	AA7	A	345	354	Right-handed alpha
Helix 8	AA8	A	380	390	Right-handed alpha
Helix 9	AA9	A	439	446	Right-handed alpha
Helix 10	AB1	A	448	474	Right-handed alpha
Helix 11	AB2	A	474	487	Right-handed alpha
Helix 12	AB3	A	497	502	Right-handed alpha
Helix 13	AB4	A	502	514	Right-handed alpha
Helix 14	AB5	A	552	562	Right-handed alpha
Helix 15	AB6	A	564	566	Right-handed 310
Helix 16	AB7	A	579	591	Right-handed alpha
Helix 17	AB8	A	592	594	Right-handed 310
Helix 18	AB9	A	621	639	Right-handed alpha
Helix 19	AC1	A	647	652	Right-handed alpha
Helix 20	AC2	A	655	665	Right-handed alpha
Helix 21	AC3	A	666	671	Right-handed alpha
Helix 22	AC4	A	680	700	Right-handed alpha
Helix 23	AC5	A	763	782	Right-handed alpha
Helix 24	AC6	A	839	856	Right-handed alpha
Helix 25	AC7	A	862	876	Right-handed alpha
Helix 26	AC8	A	877	881	Right-handed 310
Helix 27	AC9	A	886	890	Right-handed 310
Helix 28	AD1	A	969	983	Right-handed alpha
Helix 29	AD2	A	989	993	Right-handed 310
Helix 30	AD3	B	19	38	Right-handed alpha
Helix 31	AD4	B	50	54	Right-handed 310
Helix 32	AD5	B	86	100	Right-handed alpha
Helix 33	AD6	B	137	151	Right-handed alpha
Helix 34	AD7	B	160	164	Right-handed 310
Helix 35	AD8	B	195	205	Right-handed alpha
Helix 36	AD9	C	3	19	Right-handed alpha
Helix 37	AE1	C	28	42	Right-handed alpha
Helix 38	AE2	C	106	108	Right-handed 310
Helix 39	AE3	C	109	114	Right-handed alpha
Helix 40	AE4	C	116	121	Right-handed alpha
Helix 41	AE5	C	147	158	Right-handed alpha
Helix 42	AE6	C	249	256	Right-handed alpha
Helix 43	AE7	C	288	297	Right-handed alpha
Helix 44	AE8	C	315	324	Right-handed alpha
Helix 45	AE9	C	332	341	Right-handed alpha
Helix 46	AF1	C	341	349	Right-handed alpha
Helix 47	AF2	C	352	362	Right-handed alpha
Helix 48	AF3	C	364	374	Right-handed alpha
Helix 49	AF4	C	392	396	Right-handed 310
Helix 50	AF5	C	397	406	Right-handed alpha
Helix 51	AF6	C	406	424	Right-handed alpha

There are 13 sheets in PDB entry 8J86. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	139	141	anti-parallel
Strand 3	A	29	35	parallel
Strand 4	A	17	24	anti-parallel
Strand 5	A	1	10	anti-parallel
Strand 6	A	123	127	anti-parallel
Strand 7	A	152	153	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	90	93	anti-parallel
Strand 3	A	56	58	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	66	first strand
Strand 2	A	83	86	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	568	574	parallel
Strand 3	A	610	616	anti-parallel
Strand 4	A	596	599	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	203	first strand
Strand 2	A	185	191	anti-parallel
Strand 3	A	162	166	anti-parallel
Strand 4	A	258	261	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	303	first strand
Strand 2	A	316	319	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	359	first strand
Strand 2	A	428	432	anti-parallel
Strand 3	A	394	397	anti-parallel
Strand 4	A	401	404	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	706	first strand
Strand 2	A	744	751	anti-parallel
Strand 3	A	754	758	anti-parallel
Strand 4	A	545	550	anti-parallel
Strand 5	A	789	799	anti-parallel
Strand 6	A	807	811	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	62	66	parallel
Strand 3	B	154	158	parallel
Strand 4	B	176	179	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	89	first strand
Strand 2	C	127	131	anti-parallel
Strand 3	C	136	138	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	223	first strand
Strand 2	C	237	239	anti-parallel
Strand 3	C	243	244	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	273	274	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	303	first strand
Strand 2	C	308	310	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J86

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J86