Analysis of interatomic Contacts of Structural Units in PDB entry:
8J87

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J87 entry

There are 2 chains in PDB entry 8J87 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 716	HIS 1192
B	ARG 716	HIS 1192

There are 38 helices in PDB entry 8J87. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	716	729	Right-handed alpha
Helix 2	AA2	A	738	750	Right-handed alpha
Helix 3	AA3	A	754	767	Right-handed alpha
Helix 4	AA4	A	806	814	Right-handed alpha
Helix 5	AA5	A	818	822	Right-handed 310
Helix 6	AA6	A	842	847	Right-handed alpha
Helix 7	AA7	A	866	877	Right-handed alpha
Helix 8	AA8	A	883	893	Right-handed alpha
Helix 9	AA9	A	942	951	Right-handed alpha
Helix 10	AB1	A	954	960	Right-handed alpha
Helix 11	AB2	A	979	984	Right-handed alpha
Helix 12	AB3	A	985	989	Right-handed 310
Helix 13	AB4	A	997	1003	Right-handed alpha
Helix 14	AB5	A	1027	1070	Right-handed alpha
Helix 15	AB6	A	1083	1092	Right-handed alpha
Helix 16	AB7	A	1109	1119	Right-handed alpha
Helix 17	AB8	A	1129	1133	Right-handed 310
Helix 18	AB9	A	1134	1158	Right-handed alpha
Helix 19	AC1	A	1166	1187	Right-handed alpha
Helix 20	AC2	B	717	729	Right-handed alpha
Helix 21	AC3	B	738	750	Right-handed alpha
Helix 22	AC4	B	754	767	Right-handed alpha
Helix 23	AC5	B	806	814	Right-handed alpha
Helix 24	AC6	B	818	822	Right-handed 310
Helix 25	AC7	B	842	847	Right-handed alpha
Helix 26	AC8	B	866	877	Right-handed alpha
Helix 27	AC9	B	883	893	Right-handed alpha
Helix 28	AD1	B	942	951	Right-handed alpha
Helix 29	AD2	B	954	960	Right-handed alpha
Helix 30	AD3	B	979	984	Right-handed alpha
Helix 31	AD4	B	985	989	Right-handed 310
Helix 32	AD5	B	997	1003	Right-handed alpha
Helix 33	AD6	B	1027	1070	Right-handed alpha
Helix 34	AD7	B	1083	1092	Right-handed alpha
Helix 35	AD8	B	1109	1119	Right-handed alpha
Helix 36	AD9	B	1129	1133	Right-handed 310
Helix 37	AE1	B	1134	1158	Right-handed alpha
Helix 38	AE2	B	1166	1187	Right-handed alpha

There are 12 sheets in PDB entry 8J87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	737	first strand
Strand 2	A	802	805	anti-parallel
Strand 3	A	779	780	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	827	first strand
Strand 2	A	830	834	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	909	913	first strand
Strand 2	A	916	920	anti-parallel
Strand 3	A	1007	1008	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	922	926	first strand
Strand 2	A	931	936	anti-parallel
Strand 3	A	974	977	anti-parallel
Strand 4	A	962	963	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	967	968	first strand
Strand 2	A	971	972	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1014	1016	first strand
Strand 2	A	1022	1024	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	737	first strand
Strand 2	B	802	805	anti-parallel
Strand 3	B	779	780	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	824	827	first strand
Strand 2	B	830	834	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	909	913	first strand
Strand 2	B	916	920	anti-parallel
Strand 3	B	1007	1008	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	922	926	first strand
Strand 2	B	931	936	anti-parallel
Strand 3	B	974	977	anti-parallel
Strand 4	B	962	963	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	967	968	first strand
Strand 2	B	971	972	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1014	1016	first strand
Strand 2	B	1022	1024	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J87

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J87