Analysis of interatomic Contacts of Structural Units in PDB entry:
8J88

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J88 entry

There are 2 chains in PDB entry 8J88 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 716	HIS 1192
B	ARG 716	HIS 1192

There are 36 helices in PDB entry 8J88. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	716	729	Right-handed alpha
Helix 2	AA2	A	738	750	Right-handed alpha
Helix 3	AA3	A	754	766	Right-handed alpha
Helix 4	AA4	A	806	814	Right-handed alpha
Helix 5	AA5	A	816	821	Right-handed 310
Helix 6	AA6	A	866	877	Right-handed alpha
Helix 7	AA7	A	882	893	Right-handed alpha
Helix 8	AA8	A	942	953	Right-handed alpha
Helix 9	AA9	A	953	960	Right-handed alpha
Helix 10	AB1	A	979	981	Right-handed 310
Helix 11	AB2	A	982	987	Right-handed alpha
Helix 12	AB3	A	998	1003	Right-handed alpha
Helix 13	AB4	A	1028	1070	Right-handed alpha
Helix 14	AB5	A	1084	1089	Right-handed alpha
Helix 15	AB6	A	1109	1119	Right-handed alpha
Helix 16	AB7	A	1129	1133	Right-handed 310
Helix 17	AB8	A	1134	1158	Right-handed alpha
Helix 18	AB9	A	1166	1187	Right-handed alpha
Helix 19	AC1	B	717	729	Right-handed alpha
Helix 20	AC2	B	738	750	Right-handed alpha
Helix 21	AC3	B	754	766	Right-handed alpha
Helix 22	AC4	B	806	814	Right-handed alpha
Helix 23	AC5	B	816	821	Right-handed 310
Helix 24	AC6	B	866	877	Right-handed alpha
Helix 25	AC7	B	882	893	Right-handed alpha
Helix 26	AC8	B	942	953	Right-handed alpha
Helix 27	AC9	B	953	960	Right-handed alpha
Helix 28	AD1	B	979	981	Right-handed 310
Helix 29	AD2	B	982	987	Right-handed alpha
Helix 30	AD3	B	998	1003	Right-handed alpha
Helix 31	AD4	B	1028	1070	Right-handed alpha
Helix 32	AD5	B	1084	1089	Right-handed alpha
Helix 33	AD6	B	1109	1119	Right-handed alpha
Helix 34	AD7	B	1129	1133	Right-handed 310
Helix 35	AD8	B	1134	1158	Right-handed alpha
Helix 36	AD9	B	1166	1187	Right-handed alpha

There are 10 sheets in PDB entry 8J88. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	737	first strand
Strand 2	A	802	805	anti-parallel
Strand 3	A	779	780	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	826	827	first strand
Strand 2	A	830	831	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	909	913	first strand
Strand 2	A	916	920	anti-parallel
Strand 3	A	1006	1009	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	922	926	first strand
Strand 2	A	931	936	anti-parallel
Strand 3	A	974	976	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1015	1016	first strand
Strand 2	A	1022	1023	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	737	first strand
Strand 2	B	802	805	anti-parallel
Strand 3	B	779	780	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	826	827	first strand
Strand 2	B	830	831	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	909	913	first strand
Strand 2	B	916	920	anti-parallel
Strand 3	B	1006	1009	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	922	926	first strand
Strand 2	B	931	936	anti-parallel
Strand 3	B	974	976	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1015	1016	first strand
Strand 2	B	1022	1023	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J88

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J88