Analysis of interatomic Contacts of Structural Units in PDB entry:
8J8C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J8C entry

There are 2 chains in PDB entry 8J8C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 413	HIS 1192
B	VAL 413	HIS 1192

There are 58 helices in PDB entry 8J8C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	428	431	Right-handed 310
Helix 2	AA2	A	439	451	Right-handed alpha
Helix 3	AA3	A	452	456	Right-handed 310
Helix 4	AA4	A	502	513	Right-handed alpha
Helix 5	AA5	A	522	527	Right-handed alpha
Helix 6	AA6	A	547	560	Right-handed alpha
Helix 7	AA7	A	560	566	Right-handed alpha
Helix 8	AA8	A	592	602	Right-handed alpha
Helix 9	AA9	A	616	620	Right-handed 310
Helix 10	AB1	A	621	631	Right-handed alpha
Helix 11	AB2	A	632	634	Right-handed 310
Helix 12	AB3	A	642	653	Right-handed alpha
Helix 13	AB4	A	657	664	Right-handed alpha
Helix 14	AB5	A	672	682	Right-handed alpha
Helix 15	AB6	A	687	705	Right-handed alpha
Helix 16	AB7	A	715	729	Right-handed alpha
Helix 17	AB8	A	738	749	Right-handed alpha
Helix 18	AB9	A	754	767	Right-handed alpha
Helix 19	AC1	A	806	814	Right-handed alpha
Helix 20	AC2	A	866	877	Right-handed alpha
Helix 21	AC3	A	882	893	Right-handed alpha
Helix 22	AC4	A	942	952	Right-handed alpha
Helix 23	AC5	A	953	958	Right-handed alpha
Helix 24	AC6	A	982	991	Right-handed alpha
Helix 25	AC7	A	997	1003	Right-handed alpha
Helix 26	AC8	A	1027	1068	Right-handed alpha
Helix 27	AC9	A	1109	1119	Right-handed alpha
Helix 28	AD1	A	1137	1158	Right-handed alpha
Helix 29	AD2	A	1166	1187	Right-handed alpha
Helix 30	AD3	B	428	431	Right-handed 310
Helix 31	AD4	B	439	451	Right-handed alpha
Helix 32	AD5	B	452	456	Right-handed 310
Helix 33	AD6	B	502	513	Right-handed alpha
Helix 34	AD7	B	522	527	Right-handed alpha
Helix 35	AD8	B	547	560	Right-handed alpha
Helix 36	AD9	B	560	566	Right-handed alpha
Helix 37	AE1	B	592	602	Right-handed alpha
Helix 38	AE2	B	616	620	Right-handed 310
Helix 39	AE3	B	621	631	Right-handed alpha
Helix 40	AE4	B	632	634	Right-handed 310
Helix 41	AE5	B	642	653	Right-handed alpha
Helix 42	AE6	B	657	664	Right-handed alpha
Helix 43	AE7	B	672	682	Right-handed alpha
Helix 44	AE8	B	687	705	Right-handed alpha
Helix 45	AE9	B	715	729	Right-handed alpha
Helix 46	AF1	B	738	749	Right-handed alpha
Helix 47	AF2	B	754	767	Right-handed alpha
Helix 48	AF3	B	806	814	Right-handed alpha
Helix 49	AF4	B	866	877	Right-handed alpha
Helix 50	AF5	B	882	893	Right-handed alpha
Helix 51	AF6	B	942	952	Right-handed alpha
Helix 52	AF7	B	953	958	Right-handed alpha
Helix 53	AF8	B	982	991	Right-handed alpha
Helix 54	AF9	B	997	1003	Right-handed alpha
Helix 55	AG1	B	1027	1068	Right-handed alpha
Helix 56	AG2	B	1109	1119	Right-handed alpha
Helix 57	AG3	B	1137	1158	Right-handed alpha
Helix 58	AG4	B	1166	1187	Right-handed alpha

There are 16 sheets in PDB entry 8J8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	419	first strand
Strand 2	A	465	469	anti-parallel
Strand 3	A	433	437	parallel
Strand 4	A	533	537	parallel
Strand 5	A	569	572	parallel
Strand 6	A	636	640	anti-parallel
Strand 7	A	684	686	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	590	first strand
Strand 2	A	577	581	anti-parallel
Strand 3	A	609	613	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	737	first strand
Strand 2	A	802	805	anti-parallel
Strand 3	A	779	782	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	827	first strand
Strand 2	A	830	834	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	850	first strand
Strand 2	A	859	860	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	909	913	first strand
Strand 2	A	916	920	anti-parallel
Strand 3	A	1006	1008	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	922	926	first strand
Strand 2	A	931	936	anti-parallel
Strand 3	A	974	978	anti-parallel
Strand 4	A	960	965	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1014	1016	first strand
Strand 2	A	1022	1024	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	419	first strand
Strand 2	B	465	469	anti-parallel
Strand 3	B	433	437	parallel
Strand 4	B	533	537	parallel
Strand 5	B	569	572	parallel
Strand 6	B	636	640	anti-parallel
Strand 7	B	684	686	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	590	first strand
Strand 2	B	577	581	anti-parallel
Strand 3	B	609	613	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	737	first strand
Strand 2	B	802	805	anti-parallel
Strand 3	B	779	782	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	824	827	first strand
Strand 2	B	830	834	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	849	850	first strand
Strand 2	B	859	860	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	909	913	first strand
Strand 2	B	916	920	anti-parallel
Strand 3	B	1006	1008	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	922	926	first strand
Strand 2	B	931	936	anti-parallel
Strand 3	B	974	978	anti-parallel
Strand 4	B	960	965	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1014	1016	first strand
Strand 2	B	1022	1024	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J8C

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J8C