Analysis of interatomic Contacts of Structural Units in PDB entry:
8J8H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J8H entry

There are 4 chains in PDB entry 8J8H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG -2	ILE 507
B	ASN 139	LEU 424
E	U 1	G 20
F	T 5	A 23

There are 21 helices in PDB entry 8J8H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	17	Right-handed 310
Helix 2	AA2	A	22	31	Right-handed alpha
Helix 3	AA3	A	46	61	Right-handed alpha
Helix 4	AA4	A	77	82	Right-handed alpha
Helix 5	AA5	A	97	106	Right-handed alpha
Helix 6	AA6	A	110	129	Right-handed alpha
Helix 7	AA7	A	207	216	Right-handed alpha
Helix 8	AA8	A	227	230	Right-handed 310
Helix 9	AA9	A	251	264	Right-handed alpha
Helix 10	AB1	A	331	350	Right-handed alpha
Helix 11	AB2	A	367	375	Right-handed alpha
Helix 12	AB3	A	451	463	Right-handed alpha
Helix 13	AB4	A	477	491	Right-handed alpha
Helix 14	AB5	B	146	155	Right-handed alpha
Helix 15	AB6	B	199	203	Right-handed 310
Helix 16	AB7	B	229	233	Right-handed 310
Helix 17	AB8	B	234	238	Right-handed 310
Helix 18	AB9	B	243	249	Right-handed alpha
Helix 19	AC1	B	257	278	Right-handed alpha
Helix 20	AC2	B	353	366	Right-handed alpha
Helix 21	AC3	B	369	385	Right-handed alpha

There are 11 sheets in PDB entry 8J8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	282	first strand
Strand 2	A	356	361	parallel
Strand 3	A	382	389	parallel
Strand 4	A	441	445	anti-parallel
Strand 5	A	417	420	anti-parallel
Strand 6	A	409	412	anti-parallel
Strand 7	A	2	6	anti-parallel
Strand 8	B	409	412	parallel
Strand 9	B	169	172	anti-parallel
Strand 10	A	397	398	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	12	13	anti-parallel
Strand 3	A	270	271	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	41	44	parallel
Strand 3	A	138	143	parallel
Strand 4	A	221	225	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	286	first strand
Strand 2	A	298	299	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	311	312	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	431	432	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	334	336	anti-parallel
Strand 3	B	326	328	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	209	first strand
Strand 2	B	214	216	anti-parallel
Strand 3	B	184	188	anti-parallel
Strand 4	B	239	242	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	286	first strand
Strand 2	B	291	294	anti-parallel
Strand 3	B	317	323	anti-parallel
Strand 4	B	311	314	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	286	first strand
Strand 2	B	291	294	anti-parallel
Strand 3	B	317	323	anti-parallel
Strand 4	B	339	344	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	394	first strand
Strand 2	B	400	404	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J8H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J8H