Analysis of interatomic Contacts of Structural Units in PDB entry:
8J8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J8J entry

There are 3 chains in PDB entry 8J8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 LEU 13GLY 302
A
 LEU 13GLY 302
B
 LEU 13GLY 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8J8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
13 18Right-handed alpha
Helix 2
AA2
D
22 32Right-handed 310
Helix 3
AA3
D
33 39Right-handed alpha
Helix 4
AA4
D
49 77Right-handed alpha
Helix 5
AA5
D
104 121Right-handed alpha
Helix 6
AA6
D
123 139Right-handed alpha
Helix 7
AA7
D
140 145Right-handed 310
Helix 8
AA8
D
147 168Right-handed alpha
Helix 9
AA9
D
173 202Right-handed alpha
Helix 10
AB1
D
209 213Right-handed 310
Helix 11
AB2
D
214 242Right-handed alpha
Helix 12
AB3
D
247 268Right-handed alpha
Helix 13
AB5
D
273 281Right-handed alpha
Helix 14
AB6
D
281 302Right-handed alpha
Helix 15
AB7
A
14 18Right-handed alpha
Helix 16
AB8
A
22 32Right-handed 310
Helix 17
AB9
A
33 39Right-handed alpha
Helix 18
AC1
A
49 77Right-handed alpha
Helix 19
AC2
A
104 121Right-handed alpha
Helix 20
AC3
A
123 139Right-handed alpha
Helix 21
AC4
A
140 145Right-handed 310
Helix 22
AC5
A
147 168Right-handed alpha
Helix 23
AC6
A
173 202Right-handed alpha
Helix 24
AC7
A
209 213Right-handed 310
Helix 25
AC8
A
214 242Right-handed alpha
Helix 26
AC9
A
247 268Right-handed alpha
Helix 27
AD2
A
273 281Right-handed alpha
Helix 28
AD3
A
281 302Right-handed alpha
Helix 29
AD4
B
14 18Right-handed alpha
Helix 30
AD5
B
22 32Right-handed 310
Helix 31
AD6
B
33 39Right-handed alpha
Helix 32
AD7
B
49 77Right-handed alpha
Helix 33
AD8
B
104 121Right-handed alpha
Helix 34
AD9
B
123 139Right-handed alpha
Helix 35
AE1
B
140 145Right-handed 310
Helix 36
AE2
B
147 168Right-handed alpha
Helix 37
AE3
B
173 202Right-handed alpha
Helix 38
AE4
B
209 213Right-handed 310
Helix 39
AE5
B
214 242Right-handed alpha
Helix 40
AE6
B
247 268Right-handed alpha
Helix 41
AE8
B
273 281Right-handed alpha
Helix 42
AE9
B
281 302Right-handed alpha
Helix 43
AF1
D
78 83Right-handed 310
Helix 44
AF2
A
78 83Right-handed 310
Helix 45
AF3
B
78 83Right-handed 310
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There are no sheets in PDB entry 8J8J
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