Analysis of interatomic Contacts of Structural Units in PDB entry:
8J8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J8L entry

There are 2 chains in PDB entry 8J8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 162ALA 630
B
 VAL 44GLU 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8J8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
166 174Right-handed alpha
Helix 2
AA2
A
179 207Right-handed alpha
Helix 3
AA3
A
218 222Right-handed 310
Helix 4
AA4
A
230 235Right-handed alpha
Helix 5
AA5
A
241 247Right-handed 310
Helix 6
AA6
A
248 256Right-handed alpha
Helix 7
AA7
A
287 302Right-handed alpha
Helix 8
AA8
A
324 342Right-handed alpha
Helix 9
AA9
A
351 354Right-handed 310
Helix 10
AB1
A
356 372Right-handed alpha
Helix 11
AB2
A
385 393Right-handed alpha
Helix 12
AB3
A
412 428Right-handed alpha
Helix 13
AB4
A
441 445Right-handed 310
Helix 14
AB5
A
450 460Right-handed alpha
Helix 15
AB6
A
509 514Right-handed alpha
Helix 16
AB7
A
519 532Right-handed alpha
Helix 17
AB8
A
534 540Right-handed alpha
Helix 18
AB9
A
585 589Right-handed 310
Helix 19
AC1
B
51 64Right-handed alpha
Helix 20
AC2
B
66 70Right-handed 310
Helix 21
AC3
B
72 79Right-handed alpha
Helix 22
AC4
B
81 110Right-handed alpha
Helix 23
AC5
B
117 124Right-handed alpha
Helix 24
AC6
B
126 158Right-handed alpha
Helix 25
AC7
B
159 161Right-handed 310
Helix 26
AC8
B
167 189Right-handed alpha
Helix 27
AC9
B
189 221Right-handed alpha
Helix 28
AD1
B
243 245Right-handed 310
Helix 29
AD2
B
246 251Right-handed alpha
Helix 30
AD3
B
269 298Right-handed alpha
Helix 31
AD4
B
301 307Right-handed alpha
Helix 32
AD5
B
310 321Right-handed alpha
Helix 33
AD6
B
325 357Right-handed alpha
Helix 34
AD7
B
373 389Right-handed alpha
Helix 35
AD8
B
396 422Right-handed alpha
Helix 36
AD9
B
433 451Right-handed alpha
Helix 37
AE1
B
454 476Right-handed alpha
Helix 38
AE2
B
482 500Right-handed alpha
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There are 5 sheets in PDB entry 8J8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
466 468parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
306 308parallel
Strand 3
A
345 349parallel
Strand 4
A
376 380parallel
Strand 5
A
400 402parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
277 281anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 545first strand
Strand 2
A
551 557anti-parallel
Strand 3
A
563 569anti-parallel
Strand 4
A
621 627anti-parallel
Strand 5
A
593 599anti-parallel
Strand 6
A
610 611anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 576first strand
Strand 2
A
616 617anti-parallel
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