Analysis of interatomic Contacts of Structural Units in PDB entry:
8J8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J8M entry

There are 2 chains in PDB entry 8J8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 162ALA 630
B
 VAL 44GLU 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8J8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
166 174Right-handed alpha
Helix 2
AA2
A
178 207Right-handed alpha
Helix 3
AA3
A
242 256Right-handed alpha
Helix 4
AA4
A
287 301Right-handed alpha
Helix 5
AA5
A
324 340Right-handed alpha
Helix 6
AA6
A
351 354Right-handed 310
Helix 7
AA7
A
356 372Right-handed alpha
Helix 8
AA8
A
385 393Right-handed alpha
Helix 9
AA9
A
404 409Right-handed 310
Helix 10
AB1
A
414 428Right-handed alpha
Helix 11
AB2
A
450 459Right-handed alpha
Helix 12
AB3
A
509 516Right-handed alpha
Helix 13
AB4
A
519 532Right-handed alpha
Helix 14
AB5
A
534 540Right-handed alpha
Helix 15
AB6
B
51 64Right-handed alpha
Helix 16
AB7
B
66 79Right-handed alpha
Helix 17
AB8
B
81 110Right-handed alpha
Helix 18
AB9
B
115 123Right-handed alpha
Helix 19
AC1
B
125 139Right-handed alpha
Helix 20
AC2
B
139 158Right-handed alpha
Helix 21
AC3
B
159 161Right-handed 310
Helix 22
AC4
B
167 189Right-handed alpha
Helix 23
AC5
B
189 221Right-handed alpha
Helix 24
AC6
B
242 254Right-handed alpha
Helix 25
AC7
B
260 264Right-handed 310
Helix 26
AC8
B
269 300Right-handed alpha
Helix 27
AC9
B
301 308Right-handed alpha
Helix 28
AD1
B
310 320Right-handed alpha
Helix 29
AD2
B
325 356Right-handed alpha
Helix 30
AD3
B
373 386Right-handed alpha
Helix 31
AD4
B
387 390Right-handed 310
Helix 32
AD5
B
393 395Right-handed 310
Helix 33
AD6
B
396 422Right-handed alpha
Helix 34
AD7
B
434 454Right-handed alpha
Helix 35
AD8
B
454 466Right-handed alpha
Helix 36
AD9
B
467 476Right-handed alpha
Helix 37
AE1
B
482 500Right-handed alpha
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There are 4 sheets in PDB entry 8J8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
463 468parallel
Strand 3
A
432 434parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
305 308parallel
Strand 3
A
346 349parallel
Strand 4
A
377 380parallel
Strand 5
A
400 402parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 545first strand
Strand 2
A
551 557anti-parallel
Strand 3
A
563 569anti-parallel
Strand 4
A
622 627anti-parallel
Strand 5
A
593 599anti-parallel
Strand 6
A
610 611anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 576first strand
Strand 2
A
616 617anti-parallel
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