Analysis of interatomic Contacts of Structural Units in PDB entry:
8J8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J8P entry

There are 4 chains in PDB entry 8J8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ALA 2GLN 907
A
 SER 163GLY 209
P
 SER 16ARG 106
R
 LEU 502PHE 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 8J8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
42 52Right-handed alpha
Helix 2
AA2
C
55 68Right-handed alpha
Helix 3
AA3
C
71 84Right-handed alpha
Helix 4
AA4
C
87 90Right-handed 310
Helix 5
AA5
C
91 107Right-handed alpha
Helix 6
AA6
C
112 134Right-handed alpha
Helix 7
AA7
C
137 151Right-handed alpha
Helix 8
AA8
C
153 175Right-handed alpha
Helix 9
AA9
C
182 196Right-handed alpha
Helix 10
AB1
C
198 213Right-handed alpha
Helix 11
AB2
C
219 231Right-handed alpha
Helix 12
AB3
C
233 248Right-handed alpha
Helix 13
AB4
C
251 270Right-handed alpha
Helix 14
AB5
C
272 292Right-handed alpha
Helix 15
AB6
C
297 311Right-handed alpha
Helix 16
AB7
C
313 324Right-handed alpha
Helix 17
AB8
C
328 332Right-handed 310
Helix 18
AB9
C
333 351Right-handed alpha
Helix 19
AC1
C
353 368Right-handed alpha
Helix 20
AC2
C
371 385Right-handed alpha
Helix 21
AC3
C
387 400Right-handed alpha
Helix 22
AC4
C
405 421Right-handed alpha
Helix 23
AC5
C
422 427Right-handed alpha
Helix 24
AC6
C
430 455Right-handed alpha
Helix 25
AC7
C
462 475Right-handed alpha
Helix 26
AC8
C
477 495Right-handed alpha
Helix 27
AC9
C
501 514Right-handed alpha
Helix 28
AD1
C
517 530Right-handed alpha
Helix 29
AD2
C
538 551Right-handed alpha
Helix 30
AD3
C
555 570Right-handed alpha
Helix 31
AD4
C
573 586Right-handed alpha
Helix 32
AD5
C
591 606Right-handed alpha
Helix 33
AD6
C
609 620Right-handed alpha
Helix 34
AD7
C
629 639Right-handed alpha
Helix 35
AD8
C
648 667Right-handed alpha
Helix 36
AD9
C
670 681Right-handed alpha
Helix 37
AE1
C
681 695Right-handed alpha
Helix 38
AE2
C
698 713Right-handed alpha
Helix 39
AE3
C
714 728Right-handed alpha
Helix 40
AE4
C
731 744Right-handed alpha
Helix 41
AE5
C
748 762Right-handed alpha
Helix 42
AE6
C
766 775Right-handed alpha
Helix 43
AE7
C
776 785Right-handed alpha
Helix 44
AE8
C
788 809Right-handed alpha
Helix 45
AE9
C
816 836Right-handed alpha
Helix 46
AF1
C
847 867Right-handed alpha
Helix 47
AF2
C
874 890Right-handed alpha
Helix 48
AF3
C
892 907Right-handed alpha
Helix 49
AF4
A
165 173Right-handed alpha
Helix 50
AF5
A
193 207Right-handed alpha
Helix 51
AF6
P
32 36Right-handed 310
Helix 52
AF7
P
39 50Right-handed alpha
Helix 53
AF8
P
52 56Right-handed 310
Helix 54
AF9
P
67 71Right-handed 310
Helix 55
AG1
P
79 85Right-handed 310
Helix 56
AG2
P
92 97Right-handed alpha
Helix 57
AG3
P
98 100Right-handed 310
Helix 58
AG4
R
504 532Right-handed alpha
Helix 59
AG5
R
535 546Right-handed alpha
Helix 60
AG6
R
547 551Right-handed 310
Helix 61
AG7
R
553 561Right-handed alpha
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There are 2 sheets in PDB entry 8J8P. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 19first strand
Strand 2
C
32 33anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
P
26 27anti-parallel
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