Analysis of interatomic Contacts of Structural Units in PDB entry:
8J8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J8Q entry

There are 4 chains in PDB entry 8J8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ALA 2ASP 906
P
 ALA 9ARG 106
R
 LEU 502PHE 570
A
 ASP 164ILE 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8J8Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
41 52Right-handed alpha
Helix 2
AA2
C
55 68Right-handed alpha
Helix 3
AA3
C
71 83Right-handed alpha
Helix 4
AA4
C
91 106Right-handed alpha
Helix 5
AA5
C
112 134Right-handed alpha
Helix 6
AA6
C
137 151Right-handed alpha
Helix 7
AA7
C
153 176Right-handed alpha
Helix 8
AA8
C
182 196Right-handed alpha
Helix 9
AA9
C
198 213Right-handed alpha
Helix 10
AB1
C
219 231Right-handed alpha
Helix 11
AB2
C
233 248Right-handed alpha
Helix 12
AB3
C
251 269Right-handed alpha
Helix 13
AB4
C
272 292Right-handed alpha
Helix 14
AB5
C
297 311Right-handed alpha
Helix 15
AB6
C
313 324Right-handed alpha
Helix 16
AB7
C
328 332Right-handed 310
Helix 17
AB8
C
333 351Right-handed alpha
Helix 18
AB9
C
353 368Right-handed alpha
Helix 19
AC1
C
371 385Right-handed alpha
Helix 20
AC2
C
387 399Right-handed alpha
Helix 21
AC3
C
405 421Right-handed alpha
Helix 22
AC4
C
422 429Right-handed alpha
Helix 23
AC5
C
430 455Right-handed alpha
Helix 24
AC6
C
462 475Right-handed alpha
Helix 25
AC7
C
477 493Right-handed alpha
Helix 26
AC8
C
501 515Right-handed alpha
Helix 27
AC9
C
518 531Right-handed alpha
Helix 28
AD1
C
537 551Right-handed alpha
Helix 29
AD2
C
555 568Right-handed alpha
Helix 30
AD3
C
573 587Right-handed alpha
Helix 31
AD4
C
591 604Right-handed alpha
Helix 32
AD5
C
609 623Right-handed alpha
Helix 33
AD6
C
624 627Right-handed 310
Helix 34
AD7
C
628 639Right-handed alpha
Helix 35
AD8
C
647 663Right-handed alpha
Helix 36
AD9
C
675 695Right-handed alpha
Helix 37
AE1
C
698 712Right-handed alpha
Helix 38
AE2
C
716 726Right-handed alpha
Helix 39
AE3
C
731 746Right-handed alpha
Helix 40
AE4
C
747 760Right-handed alpha
Helix 41
AE5
C
766 784Right-handed alpha
Helix 42
AE6
C
790 809Right-handed alpha
Helix 43
AE7
C
813 831Right-handed alpha
Helix 44
AE8
C
850 864Right-handed alpha
Helix 45
AE9
C
876 906Right-handed alpha
Helix 46
AF1
P
39 50Right-handed alpha
Helix 47
AF2
P
81 85Right-handed 310
Helix 48
AF3
P
92 98Right-handed alpha
Helix 49
AF4
R
504 532Right-handed alpha
Helix 50
AF5
R
540 546Right-handed alpha
Helix 51
AF6
R
553 562Right-handed alpha
Helix 52
AF7
A
165 173Right-handed alpha
Helix 53
AF8
A
192 206Right-handed alpha
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There are 2 sheets in PDB entry 8J8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 21first strand
Strand 2
C
30 33anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
26 27first strand
Strand 2
A
174 175anti-parallel
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