Analysis of interatomic Contacts of Structural Units in PDB entry:
8J8R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J8R entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 18 chains in PDB entry 8J8R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 7	HIS 350
B	THR 7	HIS 350
C	THR 7	HIS 350
D	VAL 5	SER 123
E	SER 1	ILE 107
G	GLU 358	ASN 359
G	VAL 361	VAL 361
G	SER 364	GLY 366
H	VAL 5	SER 122
L	SER 1	ILE 107
M	VAL 5	ALA 124
N	SER 1	ILE 107
U	GLU 305	ASN 306
U	VAL 308	VAL 308
U	SER 311	GLY 313
V	GLU 347	ASN 348
V	VAL 350	VAL 350
V	SER 353	GLY 355

There are 10 helices in PDB entry 8J8R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	50	Right-handed alpha
Helix 2	AA2	A	99	110	Right-handed alpha
Helix 3	AA3	A	279	283	Right-handed 310
Helix 4	AA4	B	99	110	Right-handed alpha
Helix 5	AA5	C	45	50	Right-handed alpha
Helix 6	AA6	C	99	110	Right-handed alpha
Helix 7	AA7	C	160	162	Right-handed 310
Helix 8	AA8	D	90	94	Right-handed 310
Helix 9	AA9	H	90	94	Right-handed 310
Helix 10	AB1	M	90	94	Right-handed 310

There are 32 sheets in PDB entry 8J8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	118	first strand
Strand 2	A	38	44	anti-parallel
Strand 3	A	19	23	anti-parallel
Strand 4	A	9	13	anti-parallel
Strand 5	G	361	363	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	164	172	parallel
Strand 3	A	141	152	anti-parallel
Strand 4	A	53	64	anti-parallel
Strand 5	A	77	88	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	164	172	parallel
Strand 3	A	141	152	anti-parallel
Strand 4	A	128	130	anti-parallel
Strand 5	A	289	291	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	190	first strand
Strand 2	A	197	203	anti-parallel
Strand 3	A	215	224	anti-parallel
Strand 4	A	268	275	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	336	345	parallel
Strand 3	A	318	330	anti-parallel
Strand 4	A	229	243	anti-parallel
Strand 5	A	247	259	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	118	first strand
Strand 2	B	38	44	anti-parallel
Strand 3	B	19	23	anti-parallel
Strand 4	B	8	13	anti-parallel
Strand 5	U	308	311	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	164	172	parallel
Strand 3	B	141	152	anti-parallel
Strand 4	B	53	64	anti-parallel
Strand 5	B	77	88	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	164	172	parallel
Strand 3	B	141	152	anti-parallel
Strand 4	B	128	130	anti-parallel
Strand 5	B	289	291	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	189	first strand
Strand 2	B	198	204	anti-parallel
Strand 3	B	215	223	anti-parallel
Strand 4	B	267	275	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	209	first strand
Strand 2	B	336	344	parallel
Strand 3	B	318	330	anti-parallel
Strand 4	B	229	242	anti-parallel
Strand 5	B	248	259	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	116	first strand
Strand 2	C	40	44	anti-parallel
Strand 3	C	19	23	anti-parallel
Strand 4	C	9	13	anti-parallel
Strand 5	V	350	352	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	29	first strand
Strand 2	C	164	172	parallel
Strand 3	C	141	152	anti-parallel
Strand 4	C	53	64	anti-parallel
Strand 5	C	77	88	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	29	first strand
Strand 2	C	164	172	parallel
Strand 3	C	141	152	anti-parallel
Strand 4	C	128	130	anti-parallel
Strand 5	C	289	291	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	190	first strand
Strand 2	C	197	204	anti-parallel
Strand 3	C	215	224	anti-parallel
Strand 4	C	268	275	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	209	first strand
Strand 2	C	336	344	parallel
Strand 3	C	319	330	anti-parallel
Strand 4	C	229	241	anti-parallel
Strand 5	C	249	259	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	20	28	anti-parallel
Strand 3	D	81	87	anti-parallel
Strand 4	D	71	76	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	117	121	parallel
Strand 3	D	95	103	anti-parallel
Strand 4	D	35	42	anti-parallel
Strand 5	D	48	55	anti-parallel
Strand 6	D	60	63	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	117	121	parallel
Strand 3	D	95	103	anti-parallel
Strand 4	D	112	113	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	20	26	anti-parallel
Strand 3	E	71	76	anti-parallel
Strand 4	E	63	68	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	103	106	parallel
Strand 3	E	85	91	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	50	anti-parallel
Strand 6	E	54	55	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	103	106	parallel
Strand 3	E	85	91	anti-parallel
Strand 4	E	98	99	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	20	28	anti-parallel
Strand 3	H	81	87	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	15	first strand
Strand 2	H	117	121	parallel
Strand 3	H	95	103	anti-parallel
Strand 4	H	35	42	anti-parallel
Strand 5	H	48	55	anti-parallel
Strand 6	H	60	63	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	15	first strand
Strand 2	H	117	121	parallel
Strand 3	H	95	103	anti-parallel
Strand 4	H	112	113	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	8	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	103	106	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	103	106	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	6	10	first strand
Strand 2	M	20	28	anti-parallel
Strand 3	M	81	87	anti-parallel
Strand 4	M	71	76	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	13	15	first strand
Strand 2	M	117	121	parallel
Strand 3	M	95	103	anti-parallel
Strand 4	M	35	42	anti-parallel
Strand 5	M	49	55	anti-parallel
Strand 6	M	60	63	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	13	15	first strand
Strand 2	M	117	121	parallel
Strand 3	M	95	103	anti-parallel
Strand 4	M	112	113	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	6	8	first strand
Strand 2	N	20	25	anti-parallel
Strand 3	N	71	76	anti-parallel
Strand 4	N	63	68	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	13	first strand
Strand 2	N	103	106	parallel
Strand 3	N	86	91	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	46	50	anti-parallel
Strand 6	N	54	55	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J8R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J8R