Analysis of interatomic Contacts of Structural Units in PDB entry:
8J8V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J8V entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 16 chains in PDB entry 8J8V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 5	LYS 408
B	VAL 5	VAL 121
C	SER 1	ILE 107
D	VAL 5	SER 122
E	SER 1	ILE 107
F	PRO 5	LYS 408
G	LEU 344	LEU 344
G	CYS 347	CYS 347
G	GLU 349	GLU 349
G	ILE 352	LEU 353
G	ALA 355	ALA 355
H	LEU 344	LEU 344
H	CYS 347	CYS 347
H	GLU 349	GLU 349
H	ILE 352	LEU 353
H	ALA 355	ALA 355

There are 6 helices in PDB entry 8J8V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	99	110	Right-handed alpha
Helix 2	AA2	A	393	408	Right-handed alpha
Helix 3	AA3	B	90	94	Right-handed 310
Helix 4	AA4	D	90	94	Right-handed 310
Helix 5	AA5	F	99	110	Right-handed alpha
Helix 6	AA6	F	393	408	Right-handed alpha

There are 22 sheets in PDB entry 8J8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	118	first strand
Strand 2	A	38	44	anti-parallel
Strand 3	A	19	23	anti-parallel
Strand 4	A	7	13	anti-parallel
Strand 5	G	349	353	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	165	172	parallel
Strand 3	A	142	152	anti-parallel
Strand 4	A	53	63	anti-parallel
Strand 5	A	78	88	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	165	172	parallel
Strand 3	A	142	152	anti-parallel
Strand 4	A	128	130	anti-parallel
Strand 5	A	289	291	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	190	first strand
Strand 2	A	197	203	anti-parallel
Strand 3	A	215	223	anti-parallel
Strand 4	A	267	275	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	336	344	parallel
Strand 3	A	317	330	anti-parallel
Strand 4	A	229	243	anti-parallel
Strand 5	A	247	259	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	10	first strand
Strand 2	B	20	28	anti-parallel
Strand 3	B	81	87	anti-parallel
Strand 4	B	71	76	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	117	120	parallel
Strand 3	B	95	103	anti-parallel
Strand 4	B	35	42	anti-parallel
Strand 5	B	48	55	anti-parallel
Strand 6	B	60	63	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	117	120	parallel
Strand 3	B	95	103	anti-parallel
Strand 4	B	112	113	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	20	26	anti-parallel
Strand 3	C	71	76	anti-parallel
Strand 4	C	63	68	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	103	106	parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	50	anti-parallel
Strand 6	C	54	55	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	103	106	parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	98	99	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	20	28	anti-parallel
Strand 3	D	81	87	anti-parallel
Strand 4	D	71	76	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	117	121	parallel
Strand 3	D	95	103	anti-parallel
Strand 4	D	35	42	anti-parallel
Strand 5	D	48	55	anti-parallel
Strand 6	D	60	63	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	117	121	parallel
Strand 3	D	95	103	anti-parallel
Strand 4	D	112	113	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	20	26	anti-parallel
Strand 3	E	71	76	anti-parallel
Strand 4	E	63	68	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	103	106	parallel
Strand 3	E	86	91	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	50	anti-parallel
Strand 6	E	54	55	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	103	106	parallel
Strand 3	E	86	91	anti-parallel
Strand 4	E	98	99	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	118	first strand
Strand 2	F	38	43	anti-parallel
Strand 3	F	20	23	anti-parallel
Strand 4	F	7	13	anti-parallel
Strand 5	H	349	353	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	29	first strand
Strand 2	F	165	172	parallel
Strand 3	F	142	152	anti-parallel
Strand 4	F	53	63	anti-parallel
Strand 5	F	78	88	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	29	first strand
Strand 2	F	165	172	parallel
Strand 3	F	142	152	anti-parallel
Strand 4	F	128	130	anti-parallel
Strand 5	F	289	291	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	190	first strand
Strand 2	F	197	203	anti-parallel
Strand 3	F	215	223	anti-parallel
Strand 4	F	267	275	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	208	209	first strand
Strand 2	F	336	344	parallel
Strand 3	F	317	330	anti-parallel
Strand 4	F	229	243	anti-parallel
Strand 5	F	247	259	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J8V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J8V